FC925596 | Citrus Genome Database

Overview


Name	FC925596
Unique Name	FC925596
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	600

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALTY (Adenine phosphoribosyltransferase OS=Salmonella typhimurium GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALTI (Adenine phosphoribosyltransferase OS=Salmonella typhi GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALSV (Adenine phosphoribosyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALPK (Adenine phosphoribosyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALPC (Adenine phosphoribosyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALPB (Adenine phosphoribosyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALPA (Adenine phosphoribosyltransferase OS=Salmonella paratyphi A GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALNS (Adenine phosphoribosyltransferase OS=Salmonella newport (strain SL254) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALEP (Adenine phosphoribosyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SALDC (Adenine phosphoribosyltransferase OS=Salmonella dublin (strain CT_02021853) GN=apt PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.195e-38
Identity = 48/87 (55.17%), Postives = 68/87 (78.16%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +I+L VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP+KLP E I+
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIA 97

HSP 2 Score: 73.1738 bits (178), Expect = 4.195e-38
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G+  L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRL 167

The following BLAST results are available for this feature:

BLAST of FC925596 vs. ExPASy Swiss-Prot

BLAST of FC925596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
APT_SALTY	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella ty...	[more]
APT_SALTI	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella ty...	[more]
APT_SALSV	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella sc...	[more]
APT_SALPK	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella pa...	[more]
APT_SALPC	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella pa...	[more]
APT_SALPB	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella pa...	[more]
APT_SALPA	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella pa...	[more]
APT_SALNS	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella ne...	[more]
APT_SALEP	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella en...	[more]
APT_SALDC	4.195e-38	55.17	Adenine phosphoribosyltransferase OS=Salmonella du...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP11YH06FM1 TF Citrus clementina cDNA clone KN0AAP11YH06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC925596 ID=FC925596; Name=FC925596; organism=Citrus clementina; type=EST; length=600bp
CACTGACTATAACTTGCGTTTTGAGTAGTGAGTGGTGACTCGACGCAACC
TCAACAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTG
GGATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATT
ATGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGA
TACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTG
TTGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTG
GCTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGG
GGAGGTTATTTCCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAATG
GAGATGCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGA
CGATCTAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTTG
AGCGAGTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCCA
GAGCTAAAGGGTCGGGAACCGCTGGGAGAGAAACCACTATTTGTTCCTGT