FC925597

Overview
NameFC925597
Unique NameFC925597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP16_MACFA (Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca fascicularis GN=USP16 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFG--KLNKRVTFPETLDLSPY-------MSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVK-------------------DF----RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 340
            K++    AP +LT+ LKRFQ   F   K+NK + FPE LDL+P+       +++   R  +Y LY VV H   + +   GHY  Y K                   DF    +G W+ + D  V +V   +VL+  AY+L Y R+
Sbjct:  685 KQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRV-LYSLYGVVEHSGTMRS---GHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERI 825          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP16_HUMAN (Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo sapiens GN=USP16 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFG--KLNKRVTFPETLDLSPY-------MSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVK-------------------DF----RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 340
            K++    AP +LT+ LKRFQ   F   K+NK + FPE LDL+P+       +++   R  +Y LY VV H   + +   GHY  Y K                   DF    +G W+ + D  V +V   +VL+  AY+L Y R+
Sbjct:  682 KQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEENTRV-LYSLYGVVEHSGTMRS---GHYTAYAKARTANSHLSNLVLHGDIPQDFEMESKGQWFHISDTHVQAVPTTKVLNSQAYLLFYERI 822          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP16_XENTR (Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus tropicalis GN=usp16 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 45/135 (33.33%), Postives = 62/135 (45.93%), Query Frame = 2
Query:   32 ILTIALKRFQSGRFG--KLNKRVTFPETLDLSPYMSD------GGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFR------------------------GHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 340
            ILT+ LKRFQ   F   K+N+ + FPE LDL+P+ +        G+   +Y LY V+ H   + +   GHY  +VK  R                        G WY + D  V +V L  VLS  AY+L Y R+
Sbjct:  732 ILTLHLKRFQQNGFNLRKINRHIKFPEVLDLAPFCTSKCKNIPAGESRLLYSLYGVIEHSGSMRS---GHYTAFVKLRRPNQQLCEMVLKGVIPEVSGSEPGQGSWYHISDSHVQAVSLSRVLSSQAYLLFYERM 863          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP16_BOVIN (Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos taurus GN=USP16 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 48/145 (33.10%), Postives = 67/145 (46.21%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRFG--KLNKRVTFPETLDLSPYMS-----DGGDRTDV-YKLYAVVVHVDMLNASFFGHYICYVK-------------------DF-----RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 340
            K++    AP +LT+  KRFQ   F   K+NK + FPE LDL+P+ +        + T V Y LY VV H   + +   GHY  Y K                   DF     +G W+ + D  V +V   +VLS  AY+L Y R+
Sbjct:  684 KQMLISLAPPVLTLHFKRFQQAGFNLRKVNKHIKFPEILDLAPFCTLKCKNVAEEHTRVLYSLYGVVEHSGTMRS---GHYTAYAKTRTANTHLSNLVLHGDIPQDFEMESTKGQWFHISDTHVQAVPTTKVLSSQAYLLFYERI 825          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP8_YEAST (Ubiquitin carboxyl-terminal hydrolase 8 OS=Saccharomyces cerevisiae GN=UBP8 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQ---SGRFGKLNKRVTFPETLDLSPYMS--------DGGDRTDV-YKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLY 331
            K+L   + P++L + LKRF+   +G   KL+  + FP  L++  Y S        + G   D+ Y+L  +V H   +N    GHYI + K   G W++ +D  V+S+  EEVL + AY+L Y
Sbjct:  347 KQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNE---GHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 465          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP12_YEAST (Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces cerevisiae GN=UBP12 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRF--GKLNKRVTFPET-LDLSPYMSDGGD-RTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGH-WYRVDDCKVTSVDLEEVLSQGAYMLLYNR 337
            K++     P+IL I LKRF+S R    K++  V FP T LDLS Y+    D R  +Y LYAV  H   L     GHY  YVK+F  + WY  DD +VT    E  ++  AY+L Y R
Sbjct:  996 KQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGG---GHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: UBP11_ARATH (Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRF--GKLNKRVTFP-ETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDF-RGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKE 394
            K+L   + P+IL   LKRF   R+   K++  V F    LDLS Y+ +   ++ +Y+LYA+  H   L     GHY  Y K      WY  DD +V++V+  E+ +  AY+L Y RV +      D+E+S  + +
Sbjct:  767 KKLDLWKLPDILVFHLKRFTYSRYFKNKIDTLVNFHIHDLDLSKYVKNEDGQSYLYELYAISNHYGGLGG---GHYTAYAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVLFYQRVKS------DSETSDMKMD 892          
BLAST of FC925597 vs. ExPASy Swiss-Prot
Match: NOT_DROME (Ubiquitin carboxyl-terminal hydrolase nonstop OS=Drosophila melanogaster GN=not PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 36/116 (31.03%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    2 KRLTFRRAPNILTIALKRFQSGRF--GKLNKRVTFPETLDLSPYMSDGGDRTDVYK--LYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNR 337
            K+ + R  P++++  LKRF+       K++  + FP   D++P+MS+  +    ++  LYAVV HV  ++    GHY  YV+  +  W + DD  +T   L++VL    Y+L Y++
Sbjct:  617 KQFSLRTLPSVVSFHLKRFEHSALIDRKISSFIQFPVEFDMTPFMSEKKNAYGDFRFSLYAVVNHVGTIDT---GHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLFYHK 729          
The following BLAST results are available for this feature:
BLAST of FC925597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UBP16_MACFA1.688e-1132.41Ubiquitin carboxyl-terminal hydrolase 16 OS=Macaca... [more]
UBP16_HUMAN1.688e-1132.41Ubiquitin carboxyl-terminal hydrolase 16 OS=Homo s... [more]
UBP16_XENTR2.204e-1133.33Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopu... [more]
UBP16_BOVIN3.760e-1133.10Ubiquitin carboxyl-terminal hydrolase 16 OS=Bos ta... [more]
UBP8_YEAST8.376e-1133.61Ubiquitin carboxyl-terminal hydrolase 8 OS=Sacchar... [more]
UBP12_YEAST8.376e-1141.88Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccha... [more]
UBP11_ARATH8.376e-1133.33Putative ubiquitin carboxyl-terminal hydrolase 11 ... [more]
NOT_DROME8.376e-1131.03Ubiquitin carboxyl-terminal hydrolase nonstop OS=D... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM08FM1 TF Citrus clementina cDNA clone KN0AAP8YM08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925597 ID=FC925597; Name=FC925597; organism=Citrus clementina; type=EST; length=698bp
GAAGCGGTTAACTTTTCGACGAGCTCCGAACATTCTCACAATTGCCTTAA
AAAGATTTCAGAGCGGAAGATTTGGGAAACTTAACAAAAGAGTTACTTTT
CCTGAGACTTTGGACCTAAGTCCTTACATGAGTGATGGAGGAGATCGTAC
AGATGTCTACAAGCTATATGCTGTTGTTGTCCATGTGGACATGCTTAATG
CCTCGTTTTTTGGTCACTATATCTGTTACGTCAAGGATTTTCGTGGACAC
TGGTACAGAGTTGATGACTGTAAGGTTACTAGTGTTGATTTGGAAGAGGT
ACTTTCTCAGGGAGCATATATGCTTCTATATAACAGGGTTTCAGCACGAC
CTTCATATTTAGTCGATACTGAATCTTCGAGTTCAAGGAAGGAGGAGCCC
AGTGCAGTTAATGCAGAAACAGAGCCAAAAGAAGTTGAATGCTCCTCTAC
CATGGAGTCAATTAATCCCAATAGCAGGTCTCTTTCCCTCCCATGTGATG
ACTTTTCGCATTTGAGGGTTTCAAGTTGCAAAAGCAAGTCAGCTGGGGCA
ATTGATCCTCAAGCGGTACCAGCACATTTCAAGGATACTAATGTGGACAA
TATAGAGTCAAAGTTCCAACGGTGTTTTCAGTCATGAAAGTCATTCTTCT
TCTTTTTGGCTTTAATTCTGAAGATTTAAGAGTAGATGCCATGGATGT
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