FC925755

Overview
NameFC925755
Unique NameFC925755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: EF117_ARATH (Ethylene-responsive transcription factor ERF117 OS=Arabidopsis thaliana GN=ERF117 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  300 YLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 560
            Y N  +++G++    R+  + ++G+R+RPWGK+AAEIR+P +  R WLGTF T EEAA AY K  R+   +   V    E+D+  +T
Sbjct:   66 YENVSNSTGNKAAGNRKTSSGFKGVRRRPWGKFAAEIRNPFEKKRKWLGTFPTEEEAAEAYQKSKREFDERLGLVK--QEKDLVDLT 150          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: EF122_ARATH (Ethylene-responsive transcription factor ERF122 OS=Arabidopsis thaliana GN=ERF122 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  312 CSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVN 527
            C+     ++ K+++K  Y+G+R++P GKWAAEI DPR   R WLGTF TAE AA++Y+  A + R ++ K N
Sbjct:  106 CTLQRPHREVKKEKK--YKGVRKKPSGKWAAEIWDPRSKSRRWLGTFLTAEMAAQSYNDAAAEYRARRGKTN 175          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  342 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV-TPAAAAH 578
            +R++  +YRGIR R  GKW +EIR+P+K  RVWLGT+ T E AA AYD  A  ++G    +NFP+    + +   ++AAH
Sbjct:   83 RRKKNPVYRGIRCRS-GKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPDSLGSYPIPLSSSAAH 161          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: EF118_ARATH (Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 3
Query:  369 GIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYD 485
            G+RQR WGKWAAEIRDP K  R WLGTF+T EEAA+AYD
Sbjct:  115 GVRQRKWGKWAAEIRDPIKKTRTWLGTFDTLEEAAKAYD 153          
The following BLAST results are available for this feature:
BLAST of FC925755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
EF117_ARATH3.981e-1241.38Ethylene-responsive transcription factor ERF117 OS... [more]
EF122_ARATH5.200e-1245.83Ethylene-responsive transcription factor ERF122 OS... [more]
ERF26_ARATH8.869e-1245.00Ethylene-responsive transcription factor ERF026 OS... [more]
EF118_ARATH8.869e-1276.92Ethylene-responsive transcription factor ERF118 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YN23FM1 TF Citrus clementina cDNA clone KN0AAP3YN23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925755 ID=FC925755; Name=FC925755; organism=Citrus clementina; type=EST; length=578bp
ACCCTTTGAGCTTTCTCGCATCTTCTTTTCTCTTACTAATCGCCAAAACC
ACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTTATTATTACATTT
ACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTC
GCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGGCCCAACTCACCC
TTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATCTACTCCGTTCTC
CGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTCAACCCCCTTCAT
ATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAG
AGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTGGGGCAAATGGGC
AGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACAT
TCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAG
ATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGAAGAGGACGTCTT
CACCGTCACCCCTGCTGCTGCCGCCCAT
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