FC925755

Overview
NameFC925755
Unique NameFC925755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 58/130 (44.62%), Postives = 75/130 (57.69%), Query Frame = 3
Query:  162 SRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPK---RQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 539
            S V+ SD      F  + Q  + FE    S   +   KI  P    ++   + +   +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+TA EAARAYD+ A ++RG KA +NFP E
Sbjct:   90 SEVSVSDF----DFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLE 215          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.971e-19
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTV 557
            +RG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAARAYD  AR+ RG KAK NFP   +  TV
Sbjct:   33 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTV 97          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.971e-19
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAARAYD  AR  RG KAK NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.971e-19
Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  258 HQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 539
            H + + + + +PP    +   +    +   QR   YRG+R+RPWGK+AAEIRDP +KGVRVWLGTF+TA EAAR YDK A K+RG KA +NFP E
Sbjct:   39 HCTTSTLSQRKPPLATIAVPTTAPVVQENDQRH--YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.575e-19
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPAAAAH 578
            YRG+R+RPWGK+AAEIRD RK G RVWLGTF+TAE+AARAYD+ A  +RGK A +NFP+E ++ T + + AA+
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHEYNMGTGSSSTAAN 92          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.363e-19
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 536
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAA+AYD  AR+ RG KAK NFP+
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPS 84          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  222 PHNFESTPFSDEHQS---LAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 545
            P  F ST   D HQ+   + +     P +   +  A+G   K    +K LYRG+RQR WGKW AEIR P+  +RVWLGT++TAE AA AYD+ A K+RG+ A++NFPN +D
Sbjct:   92 PPLFSST--YDHHQTSELMLQAAAGSPAAAFAAALAAGRVTK----KKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKD 196          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            YRG+R+RPWG++AAEIRDP K  RVWLGTF+TAEEAA+AYD  AR+ RG KAK NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.736e-19
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  141 FFPRHGGSRVTASDLWPNSPFAATKQ----LPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 536
            +F     S V  +D W + P +        + +       S    S+  +  P   +   +  ASG      RQ+   YRG+R+RPWGK+AAEIRDP+K G RVWLGT+ T E+AA AYD+ A ++RG KAK+NFP+
Sbjct:   16 YFRNPSFSNVILNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAP--RQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPH 150          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.736e-19
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 3
Query:  360 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYD+EA K+RG+ A++NFP
Sbjct:  186 LYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
The following BLAST results are available for this feature:
BLAST of FC925755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
EF102_ARATH1.156e-1944.62Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF80_ARATH1.971e-1967.69Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF78_ARATH1.971e-1975.44Ethylene-responsive transcription factor 4 OS=Arab... [more]
EF105_ARATH1.971e-1952.63Ethylene-responsive transcription factor ERF105 OS... [more]
ERF97_ARATH2.575e-1963.01Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF4_TOBAC3.363e-1972.41Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF61_ARATH4.392e-1946.85Ethylene-responsive transcription factor ERF061 OS... [more]
ERF4_NICSY4.392e-1973.68Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF99_ARATH5.736e-1939.42Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF53_ARATH5.736e-1970.69Ethylene-responsive transcription factor ERF053 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YN23FM1 TF Citrus clementina cDNA clone KN0AAP3YN23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925755 ID=FC925755; Name=FC925755; organism=Citrus clementina; type=EST; length=578bp
ACCCTTTGAGCTTTCTCGCATCTTCTTTTCTCTTACTAATCGCCAAAACC
ACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTTATTATTACATTT
ACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTC
GCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGGCCCAACTCACCC
TTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATCTACTCCGTTCTC
CGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTCAACCCCCTTCAT
ATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAG
AGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTGGGGCAAATGGGC
AGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACAT
TCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAG
ATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGAAGAGGACGTCTT
CACCGTCACCCCTGCTGCTGCCGCCCAT
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