FC925755

Overview
NameFC925755
Unique NameFC925755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  192 NSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 536
            +S FA +   P ++ S   S  H        P+P S   + +++    K       LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYDK A K+RG  A++NFP+
Sbjct:   38 SSAFAFSLPAPISYGSDLHSFSHHL-----SPKPVSMKQTGTSAAKPTK-------LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPD 140          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  360 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEEAA AYD++A K+RG  A +NFP
Sbjct:  142 LYRGVRQRQWGKWVAEIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  234 ESTPFSDEH--QSLAKIKRPQPP-SYLNSCSASGDEKKPKRQ------RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            ++T  SD+    ++ ++KR     + + S  + GD K+          R+  +RG+RQRPWG+WAAEIRDP +G RVWLGT++T EEAA  YDK A K++G  A  NFP
Sbjct:   46 DATDSSDDEGRNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFP 154          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 49/104 (47.12%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  282 RPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF-------PNEEDVFTVTPAAA 572
            +P P +  N      +  K  R     YRG+R+RPWG++AAEIRDP K  RVWLGTF+TA++AARAYD  AR  RG KAK NF       P +      +P AA
Sbjct:    9 KPDPVAPTNPTHHESNAAKEIR-----YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSSPTQSSTVVDSPTAA 107          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            +RG+R+RPWG++AAEIRDP K  RVWLGTF++AE+AARAYD  AR +RG KAK NFP
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.718e-18
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  237 STPFSDEHQSL---AKIKRPQPPSYLNSCSASGDEKKP-----KRQRKNLYRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            S+  SDE +S     KI+ P+  + ++S     ++  P        +   YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD+ A ++RG +A +NFP
Sbjct:   98 SSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.856e-18
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 539
            YRG+R+RPWGK+AAEIRD RK G RVWLGTF+TAEEAARAYD+ A  +RG+ A +NFP+E
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHE 74          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.856e-18
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  297 SYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEED 545
            S+ +    S  +KK K + K +YRG R R WGKW +EIR+PRK  R+WLGTF TAE AARA+D  A  I+G  A +NFP   D
Sbjct:    4 SHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELAD 86          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.342e-18
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 539
            YRG+R+RPWGK+AAEIRD  R G RVWLGTFNTAE+AARAYD+ A  +RG++A +NFP+E
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.282e-18
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  342 KRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            ++ ++  YRG+R+RPWG++AAEIRDP K  RVWLG+FNT EEAARAYD  A + RG KA  NFP
Sbjct:   46 EKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
The following BLAST results are available for this feature:
BLAST of FC925755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
ERF58_ARATH2.847e-1845.22Ethylene-responsive transcription factor ERF058 OS... [more]
ERF54_ARATH2.847e-1868.97Ethylene-responsive transcription factor ERF054 OS... [more]
PTI6_SOLLC3.718e-1844.04Pathogenesis-related genes transcriptional activat... [more]
ERF79_ARATH3.718e-1847.12Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF3_TOBAC3.718e-1870.18Ethylene-responsive transcription factor 3 OS=Nico... [more]
EF100_ARATH3.718e-1847.22Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF96_ARATH4.856e-1871.67Ethylene-responsive transcription factor ERF096 OS... [more]
ERF42_ARATH4.856e-1851.81Ethylene-responsive transcription factor ERF042 OS... [more]
ERF95_ARATH6.342e-1870.00Ethylene-responsive transcription factor ERF095 OS... [more]
ERF77_ARATH8.282e-1862.50Ethylene-responsive transcription factor 10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YN23FM1 TF Citrus clementina cDNA clone KN0AAP3YN23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925755 ID=FC925755; Name=FC925755; organism=Citrus clementina; type=EST; length=578bp
ACCCTTTGAGCTTTCTCGCATCTTCTTTTCTCTTACTAATCGCCAAAACC
ACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTTATTATTACATTT
ACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTC
GCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGGCCCAACTCACCC
TTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATCTACTCCGTTCTC
CGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTCAACCCCCTTCAT
ATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAG
AGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTGGGGCAAATGGGC
AGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACAT
TCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAG
ATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGAAGAGGACGTCTT
CACCGTCACCCCTGCTGCTGCCGCCCAT
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