FC925755

Overview
NameFC925755
Unique NameFC925755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 3
Query:  360 LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 536
            LYRG+RQR WGKW AEIR PR   RVWLGTF TAE+AA AYD  A  +RG+ A +NFP+
Sbjct:  231 LYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPD 289          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  336 KPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            KPK+     YRG+RQRPWGK+AAEIRDP    R+WLGTF TAEEAA AYD+ A  ++G KA  NF
Sbjct:  101 KPKK-----YRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  348 QRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            Q+   + G+R+RPWG+W+AEIRD     R WLGTF+TAEEAARAYD  AR++RG KAK NF
Sbjct:  111 QKTGGFMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNF 171          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.936e-16
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  306 NSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPAAAAH 578
            +S S+S   + P      +YRG+R R WGKW +EIR PRK  R+WLGTF TA+ AARA+D  A  I+G  A +NFP    +F    +++ H
Sbjct:   66 SSASSSSSMQHP------VYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPH 150          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.936e-16
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEE 542
            +RG+RQR WGKW AEIR+P +G R+WLGTF TA+EAA AYD+ A+ + G  A++NFP  +
Sbjct:   79 FRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFPRSD 138          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  315 SASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            ++S  +KK   Q    + G+R+RPWG++AAEIRDP    R WLGTF+TAEEAA AYD+ AR +RG +A+ NF
Sbjct:    4 TSSKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  348 QRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            + +  YRG+R+RPWGK+AAEIRD  RKG+RVWLGTF+TAE AA AYD+ A  ++G  A +NFP
Sbjct:   77 EEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 54/132 (40.91%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  162 SRVTASDLWPNSPFAATKQLPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKKP--KRQRKN------LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            S +TAS    +SP   T     +  ++ F +E  S  K  R +  S L S     D+     KR++ N       YRG+R R WGKW +EIR+PRK  R+WLGT+ TAE AARA+D  A  I+G  A +NFP
Sbjct:   28 SSITASASLSSSP--TTSSSSSSSTNSNFIEEDNSKRKASR-RSLSSLVSVEDDDDQNGGGGKRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFP 156          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  252 DEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            DE +   K K+  P +   +    GD  K   +    YRG+RQRPWGK+AAEIRDP    R+WLGTF TAEEAA  YD+ A +I+G  A+ NF
Sbjct:   69 DEPKPARKAKKKSPAA---AAENGGDLVKSVVK----YRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.322e-15
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            YRG+R+RPWG++AAEIRDP    R WLGTF+TAE+AA AYD  AR  RG KA+ NF
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
The following BLAST results are available for this feature:
BLAST of FC925755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
ERF62_ARATH3.480e-1666.10Ethylene-responsive transcription factor ERF062 OS... [more]
CRF6_ARATH3.480e-1663.08Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF84_ARATH4.545e-1662.30Ethylene-responsive transcription factor ERF084 OS... [more]
ERF36_ARATH5.936e-1645.05Ethylene-responsive transcription factor ERF036 OS... [more]
DRE2A_ARATH5.936e-1658.33Dehydration-responsive element-binding protein 2A ... [more]
LEP_ARATH7.752e-1654.17Ethylene-responsive transcription factor LEP OS=Ar... [more]
ERF94_ARATH7.752e-1661.90Ethylene-responsive transcription factor ERF094 OS... [more]
ERF34_ARATH1.012e-1540.91Ethylene-responsive transcription factor ERF034 OS... [more]
CRF5_ARATH1.012e-1548.39Ethylene-responsive transcription factor CRF5 OS=A... [more]
ESR1_ARATH1.322e-1566.07Ethylene-responsive transcription factor ESR1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YN23FM1 TF Citrus clementina cDNA clone KN0AAP3YN23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925755 ID=FC925755; Name=FC925755; organism=Citrus clementina; type=EST; length=578bp
ACCCTTTGAGCTTTCTCGCATCTTCTTTTCTCTTACTAATCGCCAAAACC
ACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTTATTATTACATTT
ACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTC
GCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGGCCCAACTCACCC
TTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATCTACTCCGTTCTC
CGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTCAACCCCCTTCAT
ATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAG
AGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTGGGGCAAATGGGC
AGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACAT
TCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAG
ATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGAAGAGGACGTCTT
CACCGTCACCCCTGCTGCTGCCGCCCAT
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