FC925755

Overview
NameFC925755
Unique NameFC925755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.322e-15
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPN 536
            YRG+RQR WGKW AEIR+P+K  R+WLG+F TAEEAA AYD+ A K+ G  A +N P+
Sbjct:   28 YRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLPH 85          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.727e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            YRG+R+RPWG++AAEIRDP    R WLGTF+TAEEAA AYD  AR +RG KA+ NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.727e-15
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 3
Query:  219 LPHNFESTPFSDEHQSLAKIKRPQPPSYLNSCSASGDEKK-----PKRQRKNL-------------YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            +P   +S    D  + L K +     +  +SC   G  K      PKR RK               Y G+RQR WGKW AEIR+P +G ++WLGTF+++ EAA AYD+ ++ I G+ A++N P
Sbjct:    1 MPRKRKSRGTRDVAEILRKWREYNEQTEADSCIDGGGSKPIRKAPPKRSRKGCMKGKGGPENGICDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLP 123          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  333 KKPKRQ----RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNE 539
            +KPKR      +  Y+GIR R WGKW AEIR+P K  R+WLG++ TA  AARAYD     +RG  A++NFP E
Sbjct:   22 EKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEE 94          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  345 RQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVT 560
            R+R   Y+GIR R WGKW AEIR+P K  R+WLG+++T E AARAYD     +RG  A++NFP      TVT
Sbjct:   24 RKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAGVTVT 95          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            YRG+RQR WGKW AEIR+P +G R+WLG+F TA EAA AYD+ AR + G  A+VNF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            YRG+RQR WGKW AEIR+P +G R+WLG+F TA EAA AYD+ AR + G  A+VNF
Sbjct:   76 YRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 3
Query:  309 SCSASGDEKKPKRQRKN----------LYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNF 530
            SCS S    + K+Q+             Y G+R+RPWG++AAEIR+P    R WLGTF+TAEEAA AYD+ AR IRG  A+ NF
Sbjct:   11 SCSRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDVFTVTPAAA 572
            YRG+RQR WGKW AEIR+P  G R+WLGTF+++ EAA AYD+ A+ I G+ A++N P   +  + T A A
Sbjct:   72 YRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLPEITNRSSSTAATA 141          
BLAST of FC925755 vs. ExPASy Swiss-Prot
Match: DRE2B_ARATH (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  363 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFP 533
            +RG+RQR WGKW AEIR+P+ G R+WLGTF TAE+AA AYD+ A  + G  A++NFP
Sbjct:   78 FRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNFP 134          
The following BLAST results are available for this feature:
BLAST of FC925755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
DRE2F_ARATH1.322e-1562.07Dehydration-responsive element-binding protein 2F ... [more]
ESR2_ARATH1.727e-1567.86Ethylene-responsive transcription factor ESR2 OS=A... [more]
DRE2H_ARATH1.727e-1536.59Putative dehydration-responsive element-binding pr... [more]
RAP29_ARATH2.256e-1552.05Ethylene-responsive transcription factor RAP2-9 OS... [more]
RA210_ARATH2.256e-1552.78Ethylene-responsive transcription factor RAP2-10 O... [more]
DRE2A_ORYSJ2.256e-1564.29Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI2.256e-1564.29Dehydration-responsive element-binding protein 2A ... [more]
ERF87_ARATH2.946e-1550.00Ethylene-responsive transcription factor ERF087 OS... [more]
DRE2C_ARATH2.946e-1552.86Dehydration-responsive element-binding protein 2C ... [more]
DRE2B_ARATH2.946e-1561.40Dehydration-responsive element-binding protein 2B ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YN23FM1 TF Citrus clementina cDNA clone KN0AAP3YN23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925755 ID=FC925755; Name=FC925755; organism=Citrus clementina; type=EST; length=578bp
ACCCTTTGAGCTTTCTCGCATCTTCTTTTCTCTTACTAATCGCCAAAACC
ACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTTATTATTACATTT
ACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAGACTTCTTTCCTC
GCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGGCCCAACTCACCC
TTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATCTACTCCGTTCTC
CGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTCAACCCCCTTCAT
ATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAGCCCAAGAGGCAG
AGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTGGGGCAAATGGGC
AGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCTGGCTCGGCACAT
TCAACACTGCCGAAGAAGCAGCTCGAGCCTATGACAAAGAAGCCCGCAAG
ATTCGCGGCAAGAAAGCCAAAGTCAACTTCCCCAACGAAGAGGACGTCTT
CACCGTCACCCCTGCTGCTGCCGCCCAT
back to top