FC925855

Overview
NameFC925855
Unique NameFC925855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC925855 vs. ExPASy Swiss-Prot
Match: DEF11_TRIKH (Defensin Tk-AMP-D1.1 OS=Triticum kiharae PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 3 
Query:  144 RVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 284
            R C+S SH FHGACFS  NCA VC+ EGF+ GKC G +R C C+K C
Sbjct:    1 RDCESDSHKFHGACFSDTNCANVCQTEGFTAGKCVGVQRHCHCTKDC 47
[Close]
BLAST of FC925855 vs. ExPASy Swiss-Prot
Match: DEF05_ARATH (Defensin-like protein 5 OS=Arabidopsis thaliana GN=PDF2.4 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.328e-12
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 3 
Query:  126 MVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 284
            +V  E R C++ S+ F+G C S  NCA VC NEGFS G CRG RRRC C++ C
Sbjct:   24 LVTVEARTCETSSNLFNGPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCTRPC 76
[Close]
BLAST of FC925855 vs. ExPASy Swiss-Prot
Match: DF322_SOLTU (Defensin-like protein P322 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.187e-11
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 3 
Query:  135 AEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 284
            AE R C+S SH F G C    NCA VC  E FSGG C G RRRCFC+K C
Sbjct:   25 AEARHCESLSHRFKGPCTRDSNCASVCETERFSGGNCHGFRRRCFCTKPC 74
The following BLAST results are available for this feature:
BLAST of FC925855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DEF11_TRIKH4.080e-1261.70Defensin Tk-AMP-D1.1 OS=Triticum kiharae PE=1 SV=1[more]
DEF05_ARATH5.328e-1254.72Defensin-like protein 5 OS=Arabidopsis thaliana GN... [more]
DF322_SOLTU1.187e-1160.00Defensin-like protein P322 OS=Solanum tuberosum PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YL24FM1 TF Citrus clementina cDNA clone KN0AAP11YL24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925855 ID=FC925855; Name=FC925855; organism=Citrus clementina; type=EST; length=586bp
CACTCTCATATATTTTATTTGTGATTGTGGTTGCGAAAATTTACGAGCTA
AAAGAAAAAATAAATATGAAGAGTTTCTTTGGGATTTTCTTGCTGCTGCT
CATTCTATTCGCTTCTCAAGAGATGATGGTGCCGGCAGAGGGTAGGGTGT
GTCAGTCACAGAGCCATCATTTCCATGGCGCATGCTTTAGCCACCACAAC
TGTGCTTTTGTCTGCAGAAACGAAGGCTTCTCTGGTGGCAAATGCCGTGG
AGCCCGTCGCCGCTGCTTTTGCTCAAAGCTTTGCTAATTTCCCGTTGTCG
GTCTTGCTTGTGTGCTCTCTTTTGCCACTTGTCCCTCAATAATGCATGGC
TGGCTACTCTTCGTGCTAGTTTTAAGTGCGGTGTCTTAGGGCTAGCTTAA
TATTAGTTACAAATAAGGAATGCTCTTTCGTTTTGGTTTTGCTTAATTTG
TGTATCATCTGGTATTGATACTCCAGCTGCTTGCCTAATGAAAGAGCATA
TCGTCTTGTAGTTTTTGTTTCGCTTGTTTGGATGAATGAATGAGTTTGAA
TTCCTATGTCCCAAAAAAAAAAAAAAAAAAAAAAAA
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