FC925857 | Citrus Genome Database

Overview


Name	FC925857
Unique Name	FC925857
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	541

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.795e-16
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQK T AG+ TR +  VV+G+ DG VGLG+  +K++  AI+ A+  AKL++ PVRRG
Sbjct:   61 VQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRG 117

HSP 2 Score: 48.9062 bits (115), Expect = 2.795e-16
Identity = 23/51 (45.10%), Postives = 38/51 (74.51%), Query Frame = 2

Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            +WVP T++GR+V+EGKI S+ +++  +LPI E +I+D L+   LK EV+ +
Sbjct:    9 EWVPRTRVGRMVKEGKITSIYELFEKNLPILEPEIVDYLV-PDLKHEVLDV 58

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.795e-16
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            W+P T+LG++V EGKI ++E+ +   LPIKEYQI+D L+   L DEV+ I
Sbjct:   12 WIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALL-PDLVDEVLDI 60

HSP 2 Score: 50.0618 bits (118), Expect = 2.795e-16
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQ+ T +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V RG
Sbjct:   63 VQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARG 119

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.631e-16
Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK++++PVRRG
Sbjct:   64 VQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPVRRG 120

HSP 2 Score: 46.595 bits (109), Expect = 3.631e-16
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 2

Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            +W P T +G LV+ GKI S+++++  +LPI E +I+D L+  KLK EV+ I
Sbjct:   12 EWKPRTSIGNLVKNGKISSIKELFDRNLPITEPEIVDVLL-PKLKYEVVDI 61

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 4.719e-16
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQKQT AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPVRRG
Sbjct:   64 VQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRG 120

HSP 2 Score: 47.3654 bits (111), Expect = 4.719e-16
Identity = 21/50 (42.00%), Postives = 38/50 (76.00%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            W P TK+G+L++EGKI S+++++  +LPI E +I+D L+  KL+ +++ I
Sbjct:   13 WKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLL-PKLRYDIVDI 61

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.122e-16
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQK  ++G+R RF+  VVVG+ DG VG+G   ++EV  AIR AI  AKL++I VRRG
Sbjct:   61 VQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRG 117

HSP 2 Score: 44.2838 bits (103), Expect = 6.122e-16
Identity = 19/51 (37.25%), Postives = 37/51 (72.55%), Query Frame = 2

Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            +W P TKLGR+V+EG+I+++++++     I E +I+D L+   L++EV+ +
Sbjct:    9 EWEPKTKLGRMVKEGEIKTIDEVFAQGWKILEPEIVDWLL-PDLEEEVLDV 58

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 6.145e-16
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQ+ T +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++ VRRG
Sbjct:   59 VQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRG 115

HSP 2 Score: 47.3654 bits (111), Expect = 6.145e-16
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 2

Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            +WVP+T LGR+V+ G+I+S+++I     PIKE +I+D  +   L DEV+ I
Sbjct:    7 EWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFL-PDLVDEVLDI 56

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.038e-15
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RRG
Sbjct:   58 VQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRG 114

HSP 2 Score: 49.2914 bits (116), Expect = 1.038e-15
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+ I
Sbjct:    7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLL-PDLEDEVLDI 55

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.038e-15
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RRG
Sbjct:   58 VQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRG 114

HSP 2 Score: 49.2914 bits (116), Expect = 1.038e-15
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+ I
Sbjct:    7 WVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLL-PDLEDEVLDI 55

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.348e-15
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL +  + RG
Sbjct:   58 VQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRG 114

HSP 2 Score: 51.2174 bits (121), Expect = 1.348e-15
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 2

Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKI 337
            +W+P T+LG+LV EG++ S+E+     LPI+E QIID L+   L+DEV+ I
Sbjct:    6 EWIPKTRLGKLVMEGQVASMEEAIKSGLPIREPQIIDMLL-PDLEDEVLDI 55

[Close]

BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.275e-15
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 3

Query:  345 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRG 515
            VQK T AG+R+RF+  VVVG+ DG VG+G   +++   A+R A+  AKL++ PVRRG
Sbjct:   65 VQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRG 121

HSP 2 Score: 44.669 bits (104), Expect = 2.275e-15
Identity = 19/39 (48.72%), Postives = 31/39 (79.49%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLI 304
            WVP T++G++V EGKI SL++I+  +LP+ E +I+D L+
Sbjct:   14 WVPRTRVGKMVVEGKITSLKEIFDRNLPLLEPEIVDYLL 52

The following BLAST results are available for this feature:

BLAST of FC925857 vs. ExPASy Swiss-Prot

BLAST of FC925857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66


Match Name	E-value	Identity	Description
RS5_IGNH4	2.795e-16	50.88	30S ribosomal protein S5P OS=Ignicoccus hospitalis...	[more]
RS5_UNCMA	2.795e-16	52.00	30S ribosomal protein S5P OS=Uncultured methanogen...	[more]
RS5_SULIN	3.631e-16	47.37	30S ribosomal protein S5P OS=Sulfolobus islandicus...	[more]
RS5_SULAC	4.719e-16	47.37	30S ribosomal protein S5P OS=Sulfolobus acidocalda...	[more]
RS5_METKA	6.122e-16	54.39	30S ribosomal protein S5P OS=Methanopyrus kandleri...	[more]
RS5_METHJ	6.145e-16	45.61	30S ribosomal protein S5P OS=Methanospirillum hung...	[more]
RS5_METMA	1.038e-15	47.37	30S ribosomal protein S5P OS=Methanosarcina mazei ...	[more]
RS5_METAC	1.038e-15	47.37	30S ribosomal protein S5P OS=Methanosarcina acetiv...	[more]
RS5_METBF	1.348e-15	45.61	30S ribosomal protein S5P OS=Methanosarcina barker...	[more]
RS5_STAMF	2.275e-15	50.88	30S ribosomal protein S5P OS=Staphylothermus marin...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP3YP09FM1 TF Citrus clementina cDNA clone KN0AAP3YP09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC925857 ID=FC925857; Name=FC925857; organism=Citrus clementina; type=EST; length=541bp
CTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAA
CCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGTGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATT
CCGGTGAGAAGGGGTTACCTGGGGTAACAAGATCGGGAGGC