FC925861

Overview
NameFC925861
Unique NameFC925861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.856e-29
Identity = 86/208 (41.35%), Postives = 119/208 (57.21%), Query Frame = 1
Query:   55 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            V  K   L  +  G+P  SD ++ +  +  LK  E     VLL+ LYL+ DPYMR  M+K        S   G+ + G  VA+V++S +  +    +V   +GW  +S+    ++  ++      +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A NY+
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKTVELPPLKDGE-----VLLEALYLTVDPYMRI-MAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHSISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYK 194          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.362e-29
Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 1
Query:   55 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            V  K   L  +  G P +SD ++ +  +  LK  E     VLL+ L+LS DPYMR    +L           G  + G  VA+V++S +  +    +V   +GW  + +     +  L+      +PLS   G +GMPG+TAY GL EVC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNY+
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGE-----VLLEALFLSVDPYMRIASKRLKE---------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYK 194          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.994e-23
Identity = 72/210 (34.29%), Postives = 112/210 (53.33%), Query Frame = 1
Query:   64 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYQE 672
            +RV+L++     G P   + ++   ++   V EG    V ++ LYLS DPYMR RM++     ++  +   + ++G GV  + +S H N+ K D V  F    +  ++    IL K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G L GQ  +L GC  VVG  G+ EK   L ++ GFD A NY+E
Sbjct:    4 QRVVLNSRPGKNGHPVAENFRVEEVNLPDCVNEGQ---VQVRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYKE 210          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.328e-21
Identity = 68/210 (32.38%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   64 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYQE 672
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V  F    +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ   L GC  VVG  G+ EK  LL ++ GFD A NY++
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAINYKK 210          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.423e-20
Identity = 67/210 (31.90%), Postives = 108/210 (51.43%), Query Frame = 1
Query:   64 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKI--QHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYQE 672
            +RV+L++     G P   + ++    +   + EG    V ++ LYLS DPYMR RM++     ++  +   + ++G G+  + +S H N  K D V  F    +  ++     L K+  Q  D  LSY+ G +GMPG+T+  G+ E    +    + + VS A+GA G + GQ     GC  VVG  G+ EK  LL ++ GFD A NY++
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQ---VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK 210          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 68/209 (32.54%), Postives = 107/209 (51.20%), Query Frame = 1
Query:   64 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGF-TGWEEYSLVTAPQI-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            +RV+L +     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  + +S H   AK D V  F   W+  +++    +  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G+ EK   L ++ GFD A NY+
Sbjct:    4 QRVVLDSRPGKNGNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAAVNYK 209          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.203e-19
Identity = 68/209 (32.54%), Postives = 108/209 (51.67%), Query Frame = 1
Query:   64 KRVILSNYV--TGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGF-TGWEEYSLVTAPQI-LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEV--CSPKKGEYVYVSAASGAVGQLVGQFAKLAGC-YVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            +RV+L++     G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++  +   +  +G G+  V +S H    K D V  F   W+  +++    +  +  Q  D  LSY+ G +GMPG+T+  G+ E    S    + + VS A+GA G L GQ   L GC  VVG  G++EK   L ++ GFD A NY+
Sbjct:    4 QRVVLNSRPGKNGNPVAENFRVEEFSLPDALNEGQ---VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYK 209          
The following BLAST results are available for this feature:
BLAST of FC925861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_BOVIN2.856e-2941.35Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_CAVPO6.362e-2940.87Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR2_BOVIN3.994e-2334.29Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB8.328e-2132.38Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN2.423e-2031.90Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_RAT9.208e-2032.54Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_MOUSE1.203e-1932.54Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YP14FM1 TF Citrus clementina cDNA clone KN0AAP3YP14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925861 ID=FC925861; Name=FC925861; organism=Citrus clementina; type=EST; length=674bp
ATTTTCCTGCCCTAGAAAAAAAACTGAGAAACAATGGCGGCTGAACAAGA
AGCTGTGAGCAATAAGCGGGTGATTCTGAGCAACTATGTGACAGGTTTTC
CAAAAGAATCAGACATGAAGATAACAAGTGGATCAATAAAGCTGAAGGTA
GCAGAGGGTTCAAAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCTTG
TGATCCTTACATGCGATGGCGTATGAGCAAGCTTGATAGACCTTCTTTTG
TTGATTCATTCCATCCTGGTGAGCCTATAAATGGTTATGGGGTAGCTAAA
GTTTTGGATTCTACACATCCAAATTATGCAAAAGATGACTTGGTTTGGGG
CTTTACCGGGTGGGAGGAGTACAGTCTCGTTACAGCCCCACAGATTTTGA
TTAAAATTCAGCATACAGATGTGCCCCTTTCATACTATACTGGAATCCTT
GGTATGCCTGGTGTGACCGCATACGCTGGTTTATACGAAGTTTGCTCTCC
GAAGAAAGGTGAGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTC
AGCTTGTTGGCCAATTTGCAAAATTGGCTGGTTGCTATGTTGTTGGAAGT
GCTGGAAGCAAAGAAAAGGTCGATTTGTTGAAGAACAAGTTTGGATTTGA
TGATGCTTTTAACTACCAGGAAGA
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