FC925968

Overview
NameFC925968
Unique NameFC925968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.885e-40
Identity = 75/152 (49.34%), Postives = 110/152 (72.37%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA +ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFET 412          
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.885e-40
Identity = 76/152 (50.00%), Postives = 110/152 (72.37%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA +ST AET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+
Sbjct:  261 QNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFET 412          
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.200e-40
Identity = 75/152 (49.34%), Postives = 110/152 (72.37%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA +ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFET 412          
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.222e-39
Identity = 75/152 (49.34%), Postives = 108/152 (71.05%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFET 412          
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.064e-39
Identity = 74/152 (48.68%), Postives = 108/152 (71.05%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NT+D++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFET 412          
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.304e-38
Identity = 76/165 (46.06%), Postives = 111/165 (67.27%), Query Frame = 3
Query:    3 YMLP*PECKVEFDEEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            YML  P  ++ + ++G  + V S  + A  K+++ DPSY   KVR VGR+ RAI I++HPIPNT++  SVQ+I+PQ Q+ R+ D+Y+   S  HNV PKG ++A +ST  ET +P +E+ PG+ LLGPV E F  + + YEPV + + D C+IS S DA +HFE+
Sbjct:  248 YMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFET 412          
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.938e-35
Identity = 75/167 (44.91%), Postives = 110/167 (65.87%), Query Frame = 3
Query:    3 YMLP*PECKVEFDEE-GKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            YML  P  +V + ++ GK   V ++  T     V+ DP+Y P K +  G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +ST  ETD P  EL+P   LLGP++E F  I + +EP  + S D+ ++S SYDA +HFES
Sbjct:  257 YMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFES 423          
The following BLAST results are available for this feature:
BLAST of FC925968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIB_HUMAN1.885e-4049.34Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_CANFA1.885e-4050.00Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDIB_PONAB4.200e-4049.34Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_BOVIN1.222e-3949.34Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG6.064e-3948.68Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]
GDI1_SCHPO2.304e-3846.06Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST6.938e-3544.91Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YO06FM1 TF Citrus clementina cDNA clone KN0AAP11YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925968 ID=FC925968; Name=FC925968; organism=Citrus clementina; type=EST; length=499bp
CGTATATGTTGCCTTAACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGGT
AAAGTAGTCCGTGTCCCGTCCGAAGGGGAAACTGCCATGTGCAAGAAAGT
TGTTTGTGATCCTTCCTATTTGCCCAACAAGGTGAGGAAGGTTGGCAGGG
TTGCTAGGGCAATCGCTATTATGAGCCACCCAATCCCAAACACCAATGAT
TCCCATTCAGTGCAGGTTATCCTTCCGCAAAAACAGTTGGGTCGTAGATC
AGACATGTACCTCTTCTGTTGTTCCTACTCCCACAATGTTGCCCCAAAGG
GCAAATTCATTGCATTCCTATCGACTGAGGCAGAGACTGATCATCCACAG
ACTGAACTTAAGCCTGGAATTGATCTTTTGGGTCCCGTCGATGAAATATT
CTATGATATATATGACAGATATGAACCAGTTAATGAACCTTCTTTGGACC
ATTGCTTTATCTCCACGAGCTATGATGCCCCAACACACTTTGAGTCAAC
back to top