FC926004

Overview
NameFC926004
Unique NameFC926004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC926004_ssr80 microsatellite FC926004_ssr80:80..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig396 contig Ccv1_Contig396:207..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCBO (Transaldolase OS=Mycobacterium bovis GN=tal PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL   G D++A    +   D++ AC +    ++++DG DG VS+EV PRLA +T+ T++ A  L K+V+RPN++IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHTYDAQIAELAARGADVDATIRTVTTDDVRSACDVLVPQWEDSDGVDGRVSIEVDPRLAHETEKTIQQAIELWKIVDRPNLFIKIPATKAGLPAISAVLAEGISVNVT 167          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL2_ANASP (Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) GN=tal2 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.136e-28
Identity = 64/156 (41.03%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  270 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            ++ GQS W DNL R +    +L  L+ + G+ G+TSNPAIF+KAI+++  Y+      V++G      Y  L+  DI++AC +   +Y+ ++  DGYVS+EV P +A DTQ T+  A+  ++ + R NV IKIP T   +P++++VI++GINVNVT
Sbjct:   10 KEYGQSIWMDNLSRDIIQSGELKNLVENQGICGITSNPAIFEKAIANNVIYDADIEAGVRAGLPTYKIYESLIFADIRNACDILRPVYEASNKLDGYVSIEVPPTIAHDTQATINEARRYYQEIGRENVMIKIPGTEAGLPAVEQVIAEGINVNVT 165          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_ACIC1 (Transaldolase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=tal PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.047e-27
Identity = 69/153 (45.10%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  279 GQSPWYDNLCRP---VTDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D++ R      +L  LI    V GVT+NP IF KAI  S  Y DQ R+L   G D+  A   L   D++ AC +   ++D TDG DG VS+EV PRLA DT+ T+  A+ L  +V+RPN++IKIPAT   +P+I + +++GI+VNVT
Sbjct:   12 GVSIWIDDISRDRLQTGNLAALIRDRHVVGVTTNPTIFGKAIEGSARYQDQLRDLAVRGVDVNEALRALTAYDVRWACDVTRPVFDATDGVDGRVSIEVDPRLAHDTEATIAEARALWWLVDRPNLFIKIPATVEGLPAIAQCLAEGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL2_STRCO (Transaldolase 2 OS=Streptomyces coelicolor GN=tal2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.047e-27
Identity = 72/154 (46.75%), Postives = 95/154 (61.69%), Query Frame = 3
Query:  276 EGQSPWYDNLCRP-VT--DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            EG + W D+L R  +T  +L  LI    V GVT+NP+IFQKAIS  + Y+ Q  +L   G  +E A   +   D++DA  +   +YD T G DG VS+EV PRLA +T  TV  AK L  +V+RPN +IKIPAT   +P+I E I  GI+VNVT
Sbjct:   11 EGVAIWLDDLSRKRITSGNLAELIDQQHVVGVTTNPSIFQKAISQGDGYDQQLADLAVRGVTVEEAIRMITTADVRDAADILRPVYDNTGGKDGRVSIEVDPRLAHNTHATVAEAKQLAWLVDRPNTFIKIPATEAGLPAIAETIGLGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL1_STRAW (Transaldolase 1 OS=Streptomyces avermitilis GN=tal1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.047e-27
Identity = 73/154 (47.40%), Postives = 95/154 (61.69%), Query Frame = 3
Query:  276 EGQSPWYDNLCRP-VT--DLLPLIA-SGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            EG S W D+L R  +T  +L  LIA   V GVT+NP+IFQ AI S   Y +Q  +L   G  ++ A   +   D++ A  +   +YD T G DG VS+EV PRLA DT+ T+  AK L  +V+RPNV IKIPAT   +P+I EVI  GI+VNVT
Sbjct:   17 EGVSIWLDDLSRKRITSGNLAELIAHKHVVGVTTNPSIFQAAIGSGEGYEEQLADLAVRGVTVDEAVRMMTTADVRAAADILRPVYDATGGRDGRVSIEVDPRLAHDTEATIAEAKQLAWLVDRPNVMIKIPATKAGLPAITEVIGLGISVNVT 170          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCPA (Transaldolase OS=Mycobacterium paratuberculosis GN=tal PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 68/153 (44.44%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI +  V GVT+NP+IFQKA +  +AY+ Q  EL   G D++A    +   D+++AC +    ++ +DG DG VS+EV PRLA DT  T+  A  L K+V+RPN++IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKCVVGVTTNPSIFQKAFAEGHAYDSQIAELAARGADVDATIRTVTTDDVRNACDVLTREWENSDGVDGRVSIEVDPRLAGDTDKTIAQAVELWKIVDRPNLFIKIPATQAGLPAITAVLAEGISVNVT 167          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL2_STRAW (Transaldolase 2 OS=Streptomyces avermitilis GN=tal2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.785e-27
Identity = 72/155 (46.45%), Postives = 97/155 (62.58%), Query Frame = 3
Query:  273 QEGQSPWYDNLCRP-VT--DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            +EG + W D+L R  +T  +L  LI    V GVT+NP+IFQKAIS  + Y+ Q  +L      +E A   +   D++DA  +   ++D TDG DG VS+EV PRLA +T+ TV  AK L  +V+RPN  IKIPAT   +P+I EVI  GI+VNVT
Sbjct:   10 KEGVAIWLDDLSRKRITSGNLAELIDQQHVVGVTTNPSIFQKAISQGDGYDQQVSDLAARRVTVEEAIRMITTADVRDAADILRPVFDATDGQDGRVSIEVDPRLAHNTKATVAEAKQLAWLVDRPNTLIKIPATKAGIPAITEVIGLGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_SACEN (Transaldolase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tal PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.045e-27
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R   +   L  LI+   V GVTSNP IF KA+S++  Y++Q REL   G  ++ A  EL  +DI++A  +F +IY+   G DG VS+EV PRLA DT+ TV  A  L K V+RPN+ +KIPAT   +P+I  V+++G++VNVT
Sbjct:   14 GVSIWLDDLSRKRINSGNLAELISDYAVVGVTSNPTIFAKALSNAADYDEQVRELAARGASVDDAVRELTTRDIREAADIFRNIYEA--GHDGRVSLEVDPRLAHDTERTVAEALDLWKAVDRPNLMVKIPATVEGLPAITRVLAEGVSVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_FRASN (Transaldolase OS=Frankia sp. (strain EAN1pec) GN=tal PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.045e-27
Identity = 69/153 (45.10%), Postives = 93/153 (60.78%), Query Frame = 3
Query:  279 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G + W D++ R      +L  L  +  V GVTSNP IFQKAI     YN+Q R+L   G D+  A   +   DI+DAC +    YD + G DG VS+EV PRLA +T+ TV  A+ L   V+RPN++IKIPAT   +P+I   ++QGI+VNVT
Sbjct:   12 GVAVWLDDISRERIRTGNLAELARTRSVVGVTSNPTIFQKAIGGGETYNEQLRDLAVRGVDVGEAVRAITAADIRDACDILRPAYDASAGVDGRVSLEVDPRLAHETERTVAEARALWWSVDRPNLFIKIPATKSGLPAITATLAQGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_THISH (Transaldolase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=tal PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.784e-27
Identity = 68/155 (43.87%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQS--GKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            GQS WYD + R + D   L  LI   G+ G+TSNPAIF KAI+ ++ Y    R+ +++  G + EA ++ L I+D+Q A  +F  +Y ET G DG+VS+EVSP LA D + TV  A+ L   ++RPN  IK+P T   V +++ +I+ G+NVNVT
Sbjct:   14 GQSIWYDYIRRDLLDSGELARLIREDGLGGLTSNPAIFDKAIAGTDLYRTAIRDALRADPGLNDEALFFRLAIEDLQRAADVFLPLYRETGGADGFVSLEVSPDLAHDAEATVREARALFARMDRPNAMIKVPGTRAGVEALETLIADGVNVNVT 168          
The following BLAST results are available for this feature:
BLAST of FC926004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_MYCBO6.136e-2843.79Transaldolase OS=Mycobacterium bovis GN=tal PE=3 S... [more]
TAL2_ANASP6.136e-2841.03Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) ... [more]
TAL_ACIC11.047e-2745.10Transaldolase OS=Acidothermus cellulolyticus (stra... [more]
TAL2_STRCO1.047e-2746.75Transaldolase 2 OS=Streptomyces coelicolor GN=tal2... [more]
TAL1_STRAW1.047e-2747.40Transaldolase 1 OS=Streptomyces avermitilis GN=tal... [more]
TAL_MYCPA1.367e-2744.44Transaldolase OS=Mycobacterium paratuberculosis GN... [more]
TAL2_STRAW1.785e-2746.45Transaldolase 2 OS=Streptomyces avermitilis GN=tal... [more]
TAL_SACEN3.045e-2746.41Transaldolase OS=Saccharopolyspora erythraea (stra... [more]
TAL_FRASN3.045e-2745.10Transaldolase OS=Frankia sp. (strain EAN1pec) GN=t... [more]
TAL_THISH6.784e-2743.87Transaldolase OS=Thioalkalivibrio sp. (strain HL-E... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YE12FM1 TF Citrus clementina cDNA clone KN0AAP5YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926004 ID=FC926004; Name=FC926004; organism=Citrus clementina; type=EST; length=725bp
CAAGGATCAACGCCTTTTTAATGGCGACCATTTTGAAGCTTACAAATCCA
GCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCTCACTGCC
TAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCAAAAGTTG
CATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGCCTCTTTG
GTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAAAGAGGAC
AACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGGTATGATA
ACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAGTGGTGTT
AGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATATCTTCATC
GAATGCTTACAATGATCAATTTAGGGAACTTGTACAATCTGGAAAAGATA
TTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGATGCATGC
AAACTTTTTGAGTCAATCTATGATGAAACCGATGGCGGTGATGGCTATGT
TTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGACCGTGG
AGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCCAATGTATACATA
AAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAAGGAAGTTATTTC
GCAGGGCATTAATGTCAATGTGACT
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