FC926004

Overview
NameFC926004
Unique NameFC926004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL1_STRCO (Transaldolase 1 OS=Streptomyces coelicolor GN=tal1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.974e-26
Identity = 69/154 (44.81%), Postives = 92/154 (59.74%), Query Frame = 3
Query:  276 EGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            +G S W D+L R   +   L  LI +  V GVT+NP+IFQ AI S   Y +Q  +L   G  ++ A   +   D++ A  +   +YD + G DG VS+EV PRLA DT  TV  A+ L  +V+RPNV IKIPAT   +P+I EVI  GI+VNVT
Sbjct:   20 QGVSVWLDDLSRRRIESGNLAELIRTKNVVGVTTNPSIFQAAIGSGEGYEEQLADLATRGVTVDEAVRMMTTADVRAAADVLRGVYDASGGRDGRVSIEVDPRLAHDTAATVAEARQLSWLVDRPNVMIKIPATKAGLPAITEVIGAGISVNVT 173          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCUA (Transaldolase OS=Mycobacterium ulcerans (strain Agy99) GN=tal PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.578e-26
Identity = 66/153 (43.14%), Postives = 97/153 (63.40%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL + G D++A    +   D+++AC +    ++ + G DG VS+EV PRLA +T  T++ A  L K+V+RPN+ IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHDYDAQVAELAERGADVDATIRTVTTDDVRNACDVLAPRWEASGGVDGRVSIEVDPRLAHETDKTIQQAVELWKIVDRPNLLIKIPATKAGLPAIAAVLAEGISVNVT 167          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCMM (Transaldolase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tal PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.578e-26
Identity = 66/153 (43.14%), Postives = 97/153 (63.40%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA+S  + Y+ Q  EL + G D++A    +   D+++AC +    ++ + G DG VS+EV PRLA +T  T++ A  L K+V+RPN+ IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   15 GVSVWLDDLSRDRLRSGNLQELIDTKSVVGVTTNPSIFQKALSEGHDYDAQVAELAERGADVDATIRTVTTDDVRNACDVLAPRWEASGGVDGRVSIEVDPRLAHETDKTIQQAVELWKIVDRPNLLIKIPATKAGLPAIAAVLAEGISVNVT 167          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_NEIG2 (Transaldolase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=tal PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L +     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP LA D QGTVE A+ LH  + R N  IK+PAT   + +++ ++S GI+VN+T
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNLT 162          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_NEIG1 (Transaldolase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=tal PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 62/152 (40.79%), Postives = 91/152 (59.87%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L +     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP LA D QGTVE A+ LH  + R N  IK+PAT   + +++ ++S GI+VN+T
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHAAIARKNAMIKVPATDAGIDALETLVSDGISVNLT 162          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_THEFY (Transaldolase OS=Thermobifida fusca (strain YX) GN=tal PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.796e-26
Identity = 68/153 (44.44%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G + W D++ R      +L  LIA   V GVTSNP IF KA++  +AY+ Q R+L   G  +E A   +   DI+ A  +   +Y+ TDG DG VS+EV PRLA DT+ TV  A+ L  +V+RPN+ IKIPAT   +P+I   +++GI+VNVT
Sbjct:   12 GVAVWLDDISRQRLRSGNLAELIAQRNVVGVTSNPTIFAKALAEGDAYDGQLRDLAVRGVSVEEAVRLITAYDIRWAADVLRPVYEATDGVDGRVSLEVDPRLARDTERTVAEARALWWLVDRPNLMIKIPATVEGLPAITAALAEGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_ARTS2 (Transaldolase OS=Arthrobacter sp. (strain FB24) GN=tal PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.850e-25
Identity = 70/163 (42.94%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  249 TTLHDLYEQEGQSPWYDNLCR---PVTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            TT        G S W D+L R       L  LI    V GVT+NP+IF  AI+S   Y+    E   +G  +E   +E+   D+ DAC LF  +   T G DG VS+EV PRLA DT GT+  AK L+K VN+ NV IKIPAT   + +I   +++GI+VNVT
Sbjct:    2 TTPTQQLSDAGVSIWLDDLSRGRLQTGTLRKLIEEKNVVGVTTNPSIFHAAITSGTDYDATIAEQAAAGSTVEETVFEITTTDVADACDLFAPVAAATRGVDGRVSIEVDPRLAWDTAGTIAEAKHLYKKVNKDNVLIKIPATLEGLEAITATLAEGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_NEIMF (Transaldolase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tal PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D+Q AC +  + ++ T G  G+VS+EVSP L+ D QGTVE A+ L+  +   N  IK+PAT   + +++ ++S GI+VN+T
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVQAACDVCLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVNLT 162          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_KOCRD (Transaldolase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=tal PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 66/163 (40.49%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  249 TTLHDLYEQEGQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            TT        G S W D+L R      +L  LI    V GVT+NP IF  A++   +Y +Q  EL  +   ++ A + +   D++DAC LF  I + T G DG VS+EV PRLA D   T   A+ L + ++RPN  IKIPAT   +PSI   +++GI+VNVT
Sbjct:    2 TTPTQKLSDAGVSIWLDDLSRQRLTSGNLQKLIDTENVVGVTTNPTIFAAALADGESYREQVAELAAADTSVDDAVFRITTDDVRDACDLFAPIAEATQGVDGRVSIEVDPRLAQDADATSAMAQKLSQTIDRPNALIKIPATEKGLPSIAATVAEGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_NEIMB (Transaldolase OS=Neisseria meningitidis serogroup B GN=tal PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP L+ D QGTVE A+ L+  +   N  IK+PAT   + +++ ++S GI+VN+T
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEIAALKQQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVNLT 162          
The following BLAST results are available for this feature:
BLAST of FC926004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL1_STRCO1.974e-2644.81Transaldolase 1 OS=Streptomyces coelicolor GN=tal1... [more]
TAL_MYCUA2.578e-2643.14Transaldolase OS=Mycobacterium ulcerans (strain Ag... [more]
TAL_MYCMM2.578e-2643.14Transaldolase OS=Mycobacterium marinum (strain ATC... [more]
TAL_NEIG23.367e-2640.79Transaldolase OS=Neisseria gonorrhoeae (strain NCC... [more]
TAL_NEIG13.367e-2640.79Transaldolase OS=Neisseria gonorrhoeae (strain ATC... [more]
TAL_THEFY9.796e-2644.44Transaldolase OS=Thermobifida fusca (strain YX) GN... [more]
TAL_ARTS22.850e-2542.94Transaldolase OS=Arthrobacter sp. (strain FB24) GN... [more]
TAL_NEIMF3.723e-2540.13Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_KOCRD3.723e-2540.49Transaldolase OS=Kocuria rhizophila (strain ATCC 9... [more]
TAL_NEIMB4.862e-2539.47Transaldolase OS=Neisseria meningitidis serogroup ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YE12FM1 TF Citrus clementina cDNA clone KN0AAP5YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926004 ID=FC926004; Name=FC926004; organism=Citrus clementina; type=EST; length=725bp
CAAGGATCAACGCCTTTTTAATGGCGACCATTTTGAAGCTTACAAATCCA
GCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCTCACTGCC
TAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCAAAAGTTG
CATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGCCTCTTTG
GTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAAAGAGGAC
AACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGGTATGATA
ACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAGTGGTGTT
AGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATATCTTCATC
GAATGCTTACAATGATCAATTTAGGGAACTTGTACAATCTGGAAAAGATA
TTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGATGCATGC
AAACTTTTTGAGTCAATCTATGATGAAACCGATGGCGGTGATGGCTATGT
TTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGACCGTGG
AGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCCAATGTATACATA
AAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAAGGAAGTTATTTC
GCAGGGCATTAATGTCAATGTGACT
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