FC926004

Overview
NameFC926004
Unique NameFC926004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCLE (Transaldolase OS=Mycobacterium leprae GN=tal PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 63/153 (41.18%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC +    ++ + G DG VS+EV PRLA DT  T+  A  L ++V+ PN++IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQAVELWRIVDHPNLFIKIPATKAGLPAITAVLAEGISVNVT 169          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_MYCLB (Transaldolase OS=Mycobacterium leprae (strain Br4923) GN=tal PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.862e-25
Identity = 63/153 (41.18%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            G S W D+L R      +L  LI    V GVT+NP+IFQKA ++ +AY+ Q  EL + G +++     +   D++ AC +    ++ + G DG VS+EV PRLA DT  T+  A  L ++V+ PN++IKIPAT   +P+I  V+++GI+VNVT
Sbjct:   17 GVSVWLDDLSRDRLQSGNLQKLIDTKSVVGVTTNPSIFQKAFANGHAYDAQIAELAKRGANVDVTVRTVTTDDVRHACDVLACEWEASHGKDGRVSIEVDPRLAHDTDKTIAQAVELWRIVDHPNLFIKIPATKAGLPAITAVLAEGISVNVT 169          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_NEIM0 (Transaldolase OS=Neisseria meningitidis serogroup C (strain 053442) GN=tal PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP L+ D QGTVE A+ L+  +   N  IK+PAT   + +++ ++S GI+VN+T
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLSPKQRYETMAVADVRAACGICLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVNLT 162          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_LEIXX (Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.083e-24
Identity = 67/149 (44.97%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  291 WYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            W D+L R       L  LIA   V GVT+NP IF  A++   AY++Q R L  +G  +E A +E+   D+ DA  +F  +Y  T G DG VS+EV P LA D   T+  AK L   V+RPNV IKIPAT   + +I E I+ GI+VNVT
Sbjct:   23 WLDDLSRERIASGGLQRLIAEKNVVGVTTNPTIFAAALAQGAAYDEQVRGLAATGVSVEDAIFEITTDDVADASDIFHDVYTATGGVDGRVSIEVEPGLAHDAAATIAEAKRLAAKVDRPNVLIKIPATVEGLEAITETIAAGISVNVT 171          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_NEIMA (Transaldolase OS=Neisseria meningitidis serogroup A GN=tal PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  279 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP L+ D QGTVE A+ L+  +   N  IK+PAT   + +++ ++S GI+VN+T
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVRAACGVCLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEARRLYAAIGCKNAMIKVPATDAGIDALETLVSDGISVNLT 162          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_ARTCA (Transaldolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tal PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  249 TTLHDLYEQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            TT      + G S W D+L R   +   L  LI    V GVT+NP+IF  AI++   Y+        +G  +E   +E+   D+ DAC LF  +   T G DG VS+EV PRLA DT GT+  AK L+K VN+ NV IKIPAT   + +I   +++GI+VNVT
Sbjct:    2 TTPTQQLSEAGVSIWLDDLSRGRLETGTLRKLIEEKNVVGVTTNPSIFHAAITAGTDYDATVAAQAAAGASVEETIFEITTTDVADACDLFAPVAAATKGVDGRVSIEVDPRLAWDTNGTIAEAKHLYKKVNKDNVLIKIPATIEGLEAITATLAEGISVNVT 164          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_CAMJJ (Transaldolase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=tal PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.987e-19
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  321 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + +  DG++S+E+ PRL D+T  ++  AK L+  +++ NV IKIPAT      + E++  GI+VN T
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKL--KGKKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNAT 149          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_CAMJ8 (Transaldolase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=tal PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  321 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + +  DG++S+E+ PRL D+T  ++  AK L+  +++ NV IKIPAT      + E++  GI+VN T
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKL--KGKRTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNAT 149          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_HELPY (Transaldolase OS=Helicobacter pylori GN=tal PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  285 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E D  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  +  +    I VNVT
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYKDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAAKSIDEAKRLFKTLNRPNVMIKVPASESGIEVVSALTQASIPVNVT 151          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_CAMJR (Transaldolase OS=Campylobacter jejuni (strain RM1221) GN=tal PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 51/135 (37.78%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  321 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L +  K  +  Y EL I DIQ A      ++ + +  DG++S+E+ PRL D+T  ++  AK L+  + + N+ IKIPAT      + E++  GI+VN T
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKLKE--KKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYELMKNGISVNAT 149          
The following BLAST results are available for this feature:
BLAST of FC926004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_MYCLE4.862e-2541.18Transaldolase OS=Mycobacterium leprae GN=tal PE=3 ... [more]
TAL_MYCLB4.862e-2541.18Transaldolase OS=Mycobacterium leprae (strain Br49... [more]
TAL_NEIM08.293e-2539.47Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_LEIXX1.083e-2444.97Transaldolase OS=Leifsonia xyli subsp. xyli GN=tal... [more]
TAL_NEIMA1.415e-2439.47Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_ARTCA1.415e-2441.72Transaldolase OS=Arthrobacter chlorophenolicus (st... [more]
TAL_CAMJJ3.987e-1939.26Transaldolase OS=Campylobacter jejuni subsp. jejun... [more]
TAL_CAMJ85.207e-1939.26Transaldolase OS=Campylobacter jejuni subsp. jejun... [more]
TAL_HELPY2.584e-1838.67Transaldolase OS=Helicobacter pylori GN=tal PE=3 S... [more]
TAL_CAMJR3.375e-1837.78Transaldolase OS=Campylobacter jejuni (strain RM12... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YE12FM1 TF Citrus clementina cDNA clone KN0AAP5YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926004 ID=FC926004; Name=FC926004; organism=Citrus clementina; type=EST; length=725bp
CAAGGATCAACGCCTTTTTAATGGCGACCATTTTGAAGCTTACAAATCCA
GCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCTCACTGCC
TAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCAAAAGTTG
CATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGCCTCTTTG
GTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAAAGAGGAC
AACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGGTATGATA
ACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAGTGGTGTT
AGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATATCTTCATC
GAATGCTTACAATGATCAATTTAGGGAACTTGTACAATCTGGAAAAGATA
TTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGATGCATGC
AAACTTTTTGAGTCAATCTATGATGAAACCGATGGCGGTGATGGCTATGT
TTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGACCGTGG
AGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCCAATGTATACATA
AAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAAGGAAGTTATTTC
GCAGGGCATTAATGTCAATGTGACT
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