FC926004

Overview
NameFC926004
Unique NameFC926004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_CAMJE (Transaldolase OS=Campylobacter jejuni GN=tal PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 51/135 (37.78%), Postives = 80/135 (59.26%), Query Frame = 3
Query:  321 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            + L L++ G+ G TSNPAIF+ AI +S  Y D+  +L +  K  +  Y EL I DIQ A      ++ + +  DG++S+E+ PRL D+T  ++  AK L+  + + N+ IKIPAT      + E++  GI+VN T
Sbjct:   19 EFLNLLSHGINGATSNPAIFKNAILNSPIYKDKILKLKE--KKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYELMKNGISVNAT 149          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_CAMJD (Transaldolase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=tal PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 52/135 (38.52%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  321 DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            + L L++  + G TSNPAIF+ AI +S  Y D+  +L   GK  +  Y EL I DIQ A      ++ + +  DG++S+E+ PRL D+T  ++  AK L+  + + NV IKIPAT      + E++  GI+VN T
Sbjct:   19 EFLNLLSHEINGATSNPAIFKNAILNSPIYKDKILKL--KGKKTKDIYEELAISDIQKAADKLAPLFYQKN--DGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENVMIKIPATKASYEVMYELMKNGISVNAT 149          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_HELPJ (Transaldolase OS=Helicobacter pylori J99 GN=tal PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.757e-18
Identity = 58/150 (38.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  285 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E D  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+      I  +    I +NVT
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESAFEVISALAQASIPINVT 151          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_HELPH (Transaldolase OS=Helicobacter pylori (strain HPAG1) GN=tal PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  285 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E D  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  I  +    I +NVT
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESGLEVISALAQASIPINVT 151          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_HELPS (Transaldolase OS=Helicobacter pylori (strain Shi470) GN=tal PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  285 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E D  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+   +  +  +    I VN T
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYKDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKDPNNGYISLEIDPFLEDDAPKSIDEAKRLFKTLNRPNVMIKVPASESGLEVVSALTKASIPVNAT 151          
BLAST of FC926004 vs. ExPASy Swiss-Prot
Match: TAL_HELP2 (Transaldolase OS=Helicobacter pylori (strain P12) GN=tal PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  285 SPWYDNLCRPV--TDLLPLIASG-VRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVNRPNVYIKIPATAPCVPSIKEVISQGINVNVT 725
            S W D + R     D L LI  G + G TSNP++F +AI+ S  Y D+  +L   GK  +  Y  L +KDI  A      +Y E +  +GY+S+E+ P L DD   +++ AK L K +NRPNV IK+PA+      I  +    I +NVT
Sbjct:    5 SLWCDFIERDFLENDFLKLINKGAICGATSNPSLFCEAITKSAFYQDEIAKL--KGKKAKEIYETLALKDILQASSALMPLY-EKNPNNGYISLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASTSGFEVISALAQASIPINVT 151          
The following BLAST results are available for this feature:
BLAST of FC926004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TAL_CAMJE3.375e-1837.78Transaldolase OS=Campylobacter jejuni GN=tal PE=3 ... [more]
TAL_CAMJD4.408e-1838.52Transaldolase OS=Campylobacter jejuni subsp. doyle... [more]
TAL_HELPJ5.757e-1838.67Transaldolase OS=Helicobacter pylori J99 GN=tal PE... [more]
TAL_HELPH7.518e-1838.67Transaldolase OS=Helicobacter pylori (strain HPAG1... [more]
TAL_HELPS1.282e-1738.00Transaldolase OS=Helicobacter pylori (strain Shi47... [more]
TAL_HELP23.731e-1738.00Transaldolase OS=Helicobacter pylori (strain P12) ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YE12FM1 TF Citrus clementina cDNA clone KN0AAP5YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926004 ID=FC926004; Name=FC926004; organism=Citrus clementina; type=EST; length=725bp
CAAGGATCAACGCCTTTTTAATGGCGACCATTTTGAAGCTTACAAATCCA
GCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCTCACTGCC
TAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCAAAAGTTG
CATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGCCTCTTTG
GTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAAAGAGGAC
AACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGGTATGATA
ACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAGTGGTGTT
AGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATATCTTCATC
GAATGCTTACAATGATCAATTTAGGGAACTTGTACAATCTGGAAAAGATA
TTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGATGCATGC
AAACTTTTTGAGTCAATCTATGATGAAACCGATGGCGGTGATGGCTATGT
TTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGACCGTGG
AGGCAGCAAAATGGCTTCACAAAGTGGTTAATCGCCCCAATGTATACATA
AAGATACCTGCCACAGCTCCTTGCGTTCCTTCTATCAAGGAAGTTATTTC
GCAGGGCATTAATGTCAATGTGACT
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