FC926005

Overview
NameFC926005
Unique NameFC926005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC926005_ssr19 microsatellite FC926005_ssr19:19..34. BLAST: Citrus ESTs to Prunus persica proteins V1
FC926005_ssr36 microsatellite FC926005_ssr36:36..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10075 contig Ccv1_Contig10075:29..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-17
Identity = 60/153 (39.22%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  268 ALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLE-------SEVATLKEKLSV------AEKEIKKMSELIEGISLNN-----------PSATIPTDMDTVDSPF 654
            A KKR+L  EQ + LE +F  ++KLE +RK KLA ELGL PRQVA+WFQNRRAR KTK++E  Y  LK+  + +   +  L+        ++  LK KL+V       E    K  E  + +  NN           P   IPTD  T +  F
Sbjct:   70 AEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLNVEGVKGIEENGALKAVEANQSVMANNEVLELSHRSPSPPPHIPTDAPTSELAF 222          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSJ (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. japonica GN=HOX13 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  274 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVV-------EKTRLESEVATLKEKL 543
            KKR+L  EQ   LE  F  ++KL+ DRK ++A +LGL PRQVAVWFQNRRAR KTK++E  +A L+  H+ +         +K  L +E+  L+EKL
Sbjct:   72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIRELREKL 168          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSI (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. indica GN=HOX13 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  274 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVV--------VEKTRLESEVATLKEKL 543
            KKR+L  EQ   LE  F  ++KL+ DRK ++A +LGL PRQVAVWFQNRRAR KTK++E  +A L+  H + +         +K  L +E+  L+EKL
Sbjct:   72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRAQHNDALRADCDALRRDKDALAAEIRELREKL 169          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  274 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAH-------ENVVVEKTRLESEVATLKEKLS 546
            KKR+L+  Q + LE +F  E+KLE +RK KLA ELGL PRQVAVWFQNRRAR KTK++E+ Y  LKT +       +++  +   L  E++ LK KL+
Sbjct:   62 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLN 159          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 1
Query:  274 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATI 621
            KKR+L  +Q + LE +F  E+KLE +RK KLA ELGL PRQVAVWFQNRRAR KTK++E+ Y  LK  +++       L     +L+       +EI K+   + G   NN +  I
Sbjct:   59 KKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKGQYDS-------LRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNNNKAI 167          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSJ (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica GN=HOX25 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  268 ALKKRKLTAEQAELLEMHFGNE-HKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIK 567
            A +KR+LTAEQ   LE  F  E  KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  L+ AH+ ++  +T L ++  +L+ ++ +  ++++
Sbjct:   80 AARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEKLQ 180          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSI (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. indica GN=HOX25 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  268 ALKKRKLTAEQAELLEMHFGNE-HKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVV-------VEKTRLESEVATLKEKLSVAEK 558
            A +KR+LTAEQ   LE  F  E  KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  L+ AH+ ++        +   L S+V  L EKL    K
Sbjct:   20 AARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQVILLTEKLQANGK 124          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  274 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVE-------KTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDT 639
            KKR+L  EQ + LE +F   +KLE +RK +LA  LGL PRQ+A+WFQNRRAR KTK++E+ Y TLK   + +  E         +L++E+  LK +       + K +E       +N S  +  D+ T
Sbjct:   85 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNREQTESINLNKETEGSCSNRSDNSSDNLRLDIST 213          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 46/118 (38.98%), Postives = 76/118 (64.41%), Query Frame = 1
Query:  235 KRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIE 588
            K    G GG  A +K++ + EQ + LE  F  + KLE  +K +LA ELGL PRQVA+WFQN+RAR K+K++E  Y+ L+  ++ ++     L+      KEKL++  K+++K++E+++
Sbjct:   17 KGGKGGGGGGAADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLK------KEKLALI-KQLEKLAEMLQ 127          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 46/118 (38.98%), Postives = 76/118 (64.41%), Query Frame = 1
Query:  235 KRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIE 588
            K    G GG  A +K++ + EQ + LE  F  + KLE  +K +LA ELGL PRQVA+WFQN+RAR K+K++E  Y+ L+  ++ ++     L+      KEKL++  K+++K++E+++
Sbjct:   17 KGGKGGGGGGAADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLK------KEKLALI-KQLEKLAEMLQ 127          
The following BLAST results are available for this feature:
BLAST of FC926005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATHB5_ARATH1.563e-1739.22Homeobox-leucine zipper protein ATHB-5 OS=Arabidop... [more]
HOX13_ORYSJ2.041e-1747.42Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
HOX13_ORYSI2.041e-1746.94Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
ATHB6_ARATH2.666e-1750.00Homeobox-leucine zipper protein ATHB-6 OS=Arabidop... [more]
ATB16_ARATH2.666e-1743.97Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]
HOX25_ORYSJ5.938e-1744.55Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX25_ORYSI2.257e-1647.62Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
ATB13_ARATH2.947e-1638.76Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
HOX6_ORYSJ5.027e-1638.98Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX6_ORYSI5.027e-1638.98Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YA22FM1 TF Citrus clementina cDNA clone KN0AAP13YA22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926005 ID=FC926005; Name=FC926005; organism=Citrus clementina; type=EST; length=694bp
TACCAATTTACCCTATCCATATATATATATATATTCACACACACACACAC
ACACACACATATTTGAGAGAGATTTATGATCAGAGAAATGATCGTAACAA
ACACGAATCATCAAGTTGAAGATAACAAAAGTAATATGGTCTTGCTTTCC
CAGTTTTACCCTTCTGATGTTCTCACACCAACTGGAATCGTTCCACAACA
AGGGGAGCCGTCTAAGCCGAAGCGCAGGCAACGCAAACGGAATACTAACG
GAAACGGTGGCTTTCGTGCTTTGAAGAAGAGAAAGCTGACGGCTGAACAA
GCTGAGCTTCTTGAGATGCATTTTGGCAACGAACACAAGCTTGAATCTGA
CAGAAAAGACAAGCTCGCTGCTGAGCTCGGACTCGACCCTCGTCAAGTGG
CCGTGTGGTTTCAGAACCGGAGGGCTCGTGATAAGACTAAGAAGATTGAG
GAGACCTACGCTACCTTGAAGACCGCTCATGAAAATGTCGTCGTGGAGAA
AACCCGACTCGAGTCTGAGGTGGCAACGCTGAAAGAGAAGCTTTCAGTTG
CCGAGAAGGAGATTAAGAAAATGTCAGAGCTCATTGAAGGGATTTCACTC
AATAATCCGAGTGCCACGATCCCAACGGACATGGACACCGTGGACTCACC
GTTTTACCCTGGACCCTTTTGCTGGTAATCTTGGGTGGTTTGAT
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