FC926005

Overview
NameFC926005
Unique NameFC926005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC926005_ssr19 microsatellite FC926005_ssr19:19..34. BLAST: Citrus ESTs to Prunus persica proteins V1
FC926005_ssr36 microsatellite FC926005_ssr36:36..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10075 contig Ccv1_Contig10075:29..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 43/95 (45.26%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  250 GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 534
            G GG    KK +L+ EQ+ LLE  F   H L   +K+ LA +L L PRQV VWFQNRRAR K K+ E     LK    ++  E  RL+ EV  L+
Sbjct:   70 GVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR 164          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 52/145 (35.86%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  247 NGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKE-KLS------VAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFYP 660
            +GNG   + KK +L+ EQA +LE  F     L   +K  LA +L L  RQV VWFQNRRAR K K+ E     LK   EN+  E  RL+ EV+ L+  KLS      +       M    E +++ + S+++   +    SP  P
Sbjct:  153 SGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGP 297          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 43/103 (41.75%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  226 RQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 534
            R   R ++ + G  A KK +L+ EQ+  LE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL  E+A L+
Sbjct:  158 RSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR 260          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 43/103 (41.75%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  226 RQRKRNTNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 534
            R   R ++ + G  A KK +L+ EQ+  LE  F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL  E+A L+
Sbjct:  158 RSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR 260          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  244 TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVA 552
            + G GG    KK +LT EQ+ LLE  F   + L   +K +LA +L L PRQV VWFQNRRAR K K+ E     LK   E++  E  +L+ E+  L+   S A
Sbjct:  105 SGGGGGGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPA 207          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  235 KRNTNGNGGFR---ALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLS 546
            +R+ +G GG     + KK +LT EQA LLE  F   + L    K +LA +LGL  RQV VWFQNRRAR K K+ E     L+   +++  +  RL  ++A L+   S
Sbjct:  101 RRSPSGGGGDEEGASRKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSS 207          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  244 TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVA 552
            + G GG R  KK +LT EQ+ LLE  F   + L   +K +LA +L L PRQV VWFQNRRAR K K+ E     LK   E++  E  +L+ E+  L+   S A
Sbjct:  107 SGGGGGTR--KKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAA 207          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 42/92 (45.65%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  259 GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 534
            G  A KK +LT +Q+ LLE +F     L   +K  LA +L L PRQV VWFQNRRAR K K+ E     LK   E +  E  RL+ E+  LK
Sbjct:  121 GVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK 212          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  223 RRQRKRNTNGNG--------GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 534
            +R+R+   +G+G        G    KK +L+ +QA +LE  F     L   +K  LA  LGL PRQV VWFQNRRAR K K+ E     LK   E +  E  RLE E+A L+
Sbjct:   90 KRERELERSGSGVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR 201          
BLAST of FC926005 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  223 RRQRKRNTNGNG--------GFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLK 534
            +R+R+   +G+G        G    KK +L+ +QA +LE  F     L   +K  LA  LGL PRQV VWFQNRRAR K K+ E     LK   E +  E  RLE E+A L+
Sbjct:   90 KRERELERSGSGVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR 201          
The following BLAST results are available for this feature:
BLAST of FC926005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
HOX3_ORYSI1.514e-1245.26Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HAT3_ARATH1.514e-1235.86Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX27_ORYSJ2.582e-1241.75Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI2.582e-1241.75Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX18_ORYSJ2.582e-1242.72Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX26_ORYSJ3.372e-1240.19Putative homeobox-leucine zipper protein HOX26 OS=... [more]
HOX18_ORYSI3.372e-1243.69Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HAT22_ARATH3.372e-1245.65Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HOX2_ORYSJ4.404e-1241.07Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI4.404e-1241.07Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YA22FM1 TF Citrus clementina cDNA clone KN0AAP13YA22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926005 ID=FC926005; Name=FC926005; organism=Citrus clementina; type=EST; length=694bp
TACCAATTTACCCTATCCATATATATATATATATTCACACACACACACAC
ACACACACATATTTGAGAGAGATTTATGATCAGAGAAATGATCGTAACAA
ACACGAATCATCAAGTTGAAGATAACAAAAGTAATATGGTCTTGCTTTCC
CAGTTTTACCCTTCTGATGTTCTCACACCAACTGGAATCGTTCCACAACA
AGGGGAGCCGTCTAAGCCGAAGCGCAGGCAACGCAAACGGAATACTAACG
GAAACGGTGGCTTTCGTGCTTTGAAGAAGAGAAAGCTGACGGCTGAACAA
GCTGAGCTTCTTGAGATGCATTTTGGCAACGAACACAAGCTTGAATCTGA
CAGAAAAGACAAGCTCGCTGCTGAGCTCGGACTCGACCCTCGTCAAGTGG
CCGTGTGGTTTCAGAACCGGAGGGCTCGTGATAAGACTAAGAAGATTGAG
GAGACCTACGCTACCTTGAAGACCGCTCATGAAAATGTCGTCGTGGAGAA
AACCCGACTCGAGTCTGAGGTGGCAACGCTGAAAGAGAAGCTTTCAGTTG
CCGAGAAGGAGATTAAGAAAATGTCAGAGCTCATTGAAGGGATTTCACTC
AATAATCCGAGTGCCACGATCCCAACGGACATGGACACCGTGGACTCACC
GTTTTACCCTGGACCCTTTTGCTGGTAATCTTGGGTGGTTTGAT
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