FC926008

Overview
NameFC926008
Unique NameFC926008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_DROSU (Uricase (Fragment) OS=Drosophila subobscura GN=Uro PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 81/239 (33.89%), Postives = 118/239 (49.37%), Query Frame = 1
Query:    7 VRVARVWRSKEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECV-------------------SVDGQ-LHEHGFKLG-SERHTTEVTVQESGTLQ-MTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            V+V  V R K   H + E+ V   L   S   Y   +NSDIVATD+ KNTVY  AK+   + S E+FA+LL +HF + Y  V  A V +   PW+ V                   S+D + LH H F    +  H  +V +      Q + +GI+GL +LKTT+S F  F+ D+  +LPD  +R+ +T V  +W YS     N       F+  +  VK +++  F G P+ G+ S S
Sbjct:   36 VKVLHVSR-KGPVHTIQEFEVGTHLKLYSKKDYYQGNNSDIVATDSQKNTVYLLAKKYGIE-SPEKFALLLGQHFLNKYSHVEEAHVHVETYPWQRVCQEETKASTTVGQGSCNFSSIDNRSLHNHAFIFTPTALHYCDVVIXRQDPKQTVITGIKGLRVLKTTQSSFVNFVNDEXRSLPDQYDRIFSTVVDCSWEYSDTDTVN-------FSRAWQQVKNIILRNFAGDPQVGVSSPS 265          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_DROME (Uricase OS=Drosophila melanogaster GN=Uro PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.814e-23
Identity = 77/231 (33.33%), Postives = 116/231 (50.22%), Query Frame = 1
Query:   46 HFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECV------------------------SVDGQ-LHEHGFKLG-SERHTTEVTVQESGTLQ-MTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            H + E+ V   L   S   Y   +NSDIVATD+ KNTVY  AK+   + S E+FA+LLA+HF + Y  V  A V +   PW+ V                        S+D + LH H F    +  H  +V ++ +   Q + +GI+GL +LKTT+S F  F+ D++ +LPD  +R+ +T V  +W YS         + L F   +  VK +++  F G P+ G+ S S
Sbjct:   56 HAIQEFEVGTHLKLYSKKDYYQGNNSDIVATDSQKNTVYLLAKKHGIE-SPEKFALLLARHFINKYSHVEEAHVHVEAYPWQRVCQEETRTNVNGKCENGVQGNCDFSSIDNRSLHNHAFIFTPTALHYCDVVIRRTDPKQTVITGIKGLRVLKTTQSSFVNFVNDEFRSLPDQYDRIFSTVVDCSWEYS-------DTENLDFLRAWQTVKNIIIRNFAGDPQVGVSSPS 278          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_PICJA (Uricase OS=Pichia jadinii PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.893e-22
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 1
Query:  100 AYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESV 546
            +Y + DNS IV TDT+KNT+   AK   E   +E FA  LA HF   Y  V+   V+IV+  W   +VDG+ H+H F   G E+  T++  + SG  +++S I+ L +LK+T S F G+ +  +T L  T +R+L+T+V +TW +  + +
Sbjct:   48 SYTEADNSSIVPTDTVKNTILVLAKTT-EIWPIERFAAKLATHFVEKYSHVSGVSVKIVQDRWVKYAVDGKPHDHSFIHEGGEKRITDLYYKRSGDYKLSSAIKDLTVLKSTGSMFYGYNKCDFTTLQPTTDRILSTDVDATWVWDNKKI 196          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_DROVI (Uricase OS=Drosophila virilis GN=Uro PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 74/227 (32.60%), Postives = 106/227 (46.70%), Query Frame = 1
Query:   46 HFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEEFAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDG---------------------QLHEHGFKLGSERHT--TEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTFFGPPKEGIYSAS 657
            H + E  V   L   S   Y+  +NSD+VATD+ KNTVY  AK+   + S E+FA++LAKHF S Y  V    V +   PW+ ++ D                      QLH H F      H     +  ++     + SGI+GL +LKTT+S F  F+ D++  L D  +R+ +T V  +W YS     N       F   +  VK +++  F G P  GI S S
Sbjct:   50 HSIQELEVGTHLKLYSNKDYMLGNNSDVVATDSQKNTVYLLAKKHGIE-SPEKFALILAKHFLSTYAHVEEVHVHVEAYPWQRMTQDVSDNIGKGYCENNCNSRSNGNCQLHNHAFIFTPTAHDYCDVILTRQDPKQTVISGIKGLRVLKTTQSSFVNFVDDEFRTLADQYDRIFSTVVECSWEYSDTESVN-------FLHAWETVKDIVVRNFAGDPSVGIPSPS 268          
BLAST of FC926008 vs. ExPASy Swiss-Prot
Match: URIC_SCHPO (Probable uricase OS=Schizosaccharomyces pombe GN=SPCC1223.09 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1
Query:   34 KEGRHFMVEWNVSISLLSDSIIAYVDDDNSDIVATDTIKNTVYAKAKECKEQLSVEE-FAILLAKHFTSFYRQVTSAIVRIVEKPWECVSVDGQLHEHGF-KLGSERHTTEVTVQESGTLQMTSGIEGLALLKTTKSGFEGFIRDKYTALPDTQERMLATEVTSTWRYSYESVFNLPQKPLYFTERYLAVKKVLMDTF 621
            K   H + E +V   L  +   +Y   DNS +V TDT KNT+Y  AK     +SV E FA  LAKHF   Y+ +  A + I   PW  + V G+ H H F +   E   T V   E     + S ++ + +LK+T SGF  F + ++T LP+  +R+ +T +   + + +   F        F   Y  VK++ ++TF
Sbjct:   27 KTKTHTVYEMDVQSLLTGELEESYTKADNSIVVPTDTQKNTIYVFAKN--NDVSVPEVFAAKLAKHFVDKYKHIHGAALDITITPWTRMEVQGKPHSHSFIRNPGETRKTHVVFSEGKGFDVVSSLKDVLVLKSTGSGFTNFHKCEFTTLPEVTDRIFSTSIDCNYTFKHFDTFE-ELAGFDFNSIYEKVKEITLETF 221          
The following BLAST results are available for this feature:
BLAST of FC926008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
URIC_DROSU3.814e-2333.89Uricase (Fragment) OS=Drosophila subobscura GN=Uro... [more]
URIC_DROME3.814e-2333.33Uricase OS=Drosophila melanogaster GN=Uro PE=1 SV=... [more]
URIC_PICJA1.893e-2238.00Uricase OS=Pichia jadinii PE=3 SV=1[more]
URIC_DROVI2.093e-2132.60Uricase OS=Drosophila virilis GN=Uro PE=2 SV=1[more]
URIC_SCHPO1.772e-2031.82Probable uricase OS=Schizosaccharomyces pombe GN=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YE16FM1 TF Citrus clementina cDNA clone KN0AAP5YE16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926008 ID=FC926008; Name=FC926008; organism=Citrus clementina; type=EST; length=659bp
GCTCGAGTGAGAGTTGCAAGAGTTTGGCGAAGCAAAGAAGGCCGCCATTT
TATGGTCGAATGGAACGTCAGCATCAGCTTGCTCTCCGATTCCATCATCG
CCTACGTTGACGACGATAACTCCGATATCGTCGCCACCGATACCATAAAA
AATACTGTTTACGCTAAAGCTAAGGAATGTAAAGAGCAACTTTCAGTCGA
GGAATTTGCTATTTTACTCGCCAAGCACTTTACGTCCTTTTATCGCCAGG
TTACTAGTGCCATAGTGAGGATAGTGGAAAAGCCATGGGAATGTGTATCC
GTGGATGGGCAACTGCATGAGCATGGTTTCAAACTTGGATCTGAGAGGCA
CACAACAGAGGTTACAGTACAGGAGTCTGGTACTTTGCAGATGACTTCTG
GCATTGAAGGACTGGCTTTGCTGAAGACAACCAAGTCAGGTTTTGAAGGG
TTTATTAGGGACAAATACACGGCTCTGCCTGATACTCAAGAAAGGATGCT
GGCAACAGAGGTCACTAGTACGTGGAGGTATTCTTATGAATCTGTCTTTA
ACCTCCCACAGAAACCGCTTTACTTCACAGAGAGATACCTGGCTGTGAAA
AAAGTTCTGATGGATACTTTCTTTGGTCCTCCGAAAGAGGGAATATACAG
TGCGTCTGT
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