FC926015

Overview
NameFC926015
Unique NameFC926015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PG1_PEA (Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  349 IDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV 525
            ++ LK++LVD+ YGT+ G  A SE RAE+ E + QLEA NPTPAP E   LLN  W+L+
Sbjct:  132 LEGLKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEPDLLNGNWVLL 190
[Close]
BLAST of FC926015 vs. ExPASy Swiss-Prot
Match: PAP3_ARATH (Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  358 LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILV 525
            LK+ L DS YGT+ G  A SE RAE++EL+ QLEA NPTPAP E   LL+  W+L+
Sbjct:  153 LKRCLADSVYGTELGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLL 208
The following BLAST results are available for this feature:
BLAST of FC926015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PG1_PEA3.315e-1254.24Plastoglobulin-1, chloroplastic OS=Pisum sativum G... [more]
PAP3_ARATH2.806e-1157.14Probable plastid-lipid-associated protein 3, chlor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YE23FM1 TF Citrus clementina cDNA clone KN0AAP5YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926015 ID=FC926015; Name=FC926015; organism=Citrus clementina; type=EST; length=689bp
GTTTTTCTAGTTTCTCTGTTGGTGAAAACTGTGTGTTGTAACTGTGTGTT
TTTGGAAAAGCTAATGGCTTCAATATCTCAAACCAACCAGTTCCCGTGCA
AGACTCTTTCACAAAACCCACCACACAATCAGTTCACCTCGAAGCCTTCA
ATTCTTCCTTTGAACTCGGTTCGAATTTCACGGAGTCTCGCCAAGAAATC
ATTTCTTTCAATCCAAGGATTCACTCGGGCCAGGCCGCTGGTTCTAACTC
GGGCTGCCGATGATGATGAGTGGGGCCCGGAGAAGGAGAAGGAGGAAGGT
GGCGCTCTGGCGGTGGCAGAGGAGGAGAGCCCAAAAGAAGTTACAGAGAT
TGATAATTTGAAGAAAGCGCTTGTGGATTCGTTTTATGGGACCGATCGTG
GATTGAATGCCACAAGTGAGACGAGGGCTGAGATCGTTGAGCTTATTACG
CAGCTTGAGGCTAAGAATCCAACCCCGGCTCCCACCGAGGCCTTAACTCT
GCTAAATGCCAAATGGATTCTTGTGTAAGTTTTCATGTTTCATGTTTCAT
TTTTTATTTGTTTGCTGAAAAATTTTATGGAAACGAATAGATTTTGGAAA
GTTTCGTATTTGCGTTTTTTTTTTGGTAATGACTAACAAAATTGGACCTT
TGGTCAATCGAAGCTTATTTAATCCATTTAGGAAATTAT
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