FC926023

Overview
NameFC926023
Unique NameFC926023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC926023_ssr373 microsatellite FC926023_ssr373:373..384. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig872 contig Ccv1_Contig872:265..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKADLPG++           R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT             I+ISG
Sbjct:   64 FKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEIS 283
            FKADLPGL+           R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT            +IEIS
Sbjct:   49 FKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FK DLPG++          G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT            AIEISG
Sbjct:   57 FKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.016e-25
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 2
Query:    5 KADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            KAD+PGL+           R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT             IEISG
Sbjct:   61 KADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.864e-25
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKADLPG++          G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT            AI+ISG
Sbjct:   57 FKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.228e-24
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            FKADLPG++          G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:   68 FKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.910e-24
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 2
Query:    5 KADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 229
            KADLPG++          GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:   59 KADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.886e-23
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            FKADLPGL+            +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT            +I+ISG
Sbjct:   59 FKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.489e-23
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   65 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.306e-21
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            FKADLPG++            +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:   59 FKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of FC926023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HSP12_MEDSA5.304e-2660.0018.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_MEDSA5.304e-2661.7018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16A_WHEAT5.304e-2660.0016.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP15_SOYBN2.016e-2561.7017.6 kDa class I heat shock protein OS=Glycine max... [more]
HS16B_WHEAT5.864e-2558.9516.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HSP11_CHERU2.228e-2466.2318.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP11_HELAN2.910e-2469.3317.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17B_ARATH1.886e-2356.8417.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP12_SOYBN5.489e-2372.97Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17A_ARATH2.306e-2163.6417.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP17FM1 TF Citrus clementina cDNA clone KN0AAP11YP17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926023 ID=FC926023; Name=FC926023; organism=Citrus clementina; type=EST; length=438bp
ATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGTAAAAGTTGAGG
TTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGGAGCAAGGAGCAG
GAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTT
CCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAACAGGTTAAGG
CCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTCCTAAACAGGAGGAG
AAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGCTAAGTGATAACTGT
AAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAA
GCAAAGCCCTTGTGTGTTTGTATGTGTGTGTGTGTTTGTTTTCCTCCCCT
CCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGTTT
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