FC926023

Overview
NameFC926023
Unique NameFC926023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC926023_ssr373 microsatellite FC926023_ssr373:373..384. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig872 contig Ccv1_Contig872:265..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.306e-21
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            FKADLPG++            +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:   61 FKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.808e-19
Identity = 53/98 (54.08%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 286
            F ADLPG+R          G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:   53 FTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.071e-18
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 2
Query:   11 DLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T
Sbjct:   83 DVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.068e-18
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 2
Query:   11 DLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T
Sbjct:   91 DVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.184e-17
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2
Query:   11 DLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 229
            D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+
Sbjct:   87 DIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.109e-15
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            F AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   83 FMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.770e-13
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   11 DLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 229
            D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   92 DVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.957e-12
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 2
Query:    2 FKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            F+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:   54 FRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.556e-12
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            F  D+PGL            R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   68 FVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of FC926023 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 2
Query:    2 FKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 232
            F  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   59 FVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of FC926023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HS178_ARATH2.306e-2162.3417.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS166_ORYSJ4.808e-1954.0816.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN4.071e-1855.4122.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA9.068e-1854.0522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH1.184e-1753.4222.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ1.109e-1548.0518.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ1.770e-1349.3523.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ1.957e-1247.4417.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HSP22_MAIZE2.556e-1246.7517.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_SOLPE5.693e-1242.8617.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP17FM1 TF Citrus clementina cDNA clone KN0AAP11YP17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926023 ID=FC926023; Name=FC926023; organism=Citrus clementina; type=EST; length=438bp
ATTCAAAGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGTAAAAGTTGAGG
TTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGAGGAGCAAGGAGCAG
GAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTT
CCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAACAGGTTAAGG
CCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTCCTAAACAGGAGGAG
AAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGCTAAGTGATAACTGT
AAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAA
GCAAAGCCCTTGTGTGTTTGTATGTGTGTGTGTGTTTGTTTTCCTCCCCT
CCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGTTT
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