FC926429

Overview
NameFC926429
Unique NameFC926429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2285 contig Ccv1_Contig2285:2..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_MAGGR (Nascent polypeptide-associated complex subunit beta OS=Magnaporthe grisea GN=EGD1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.928e-21
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 326
            V  I AIEEVN+FK D  +I F  PKV A++ ANT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G      +E DDD++P+LVAGE FE   E
Sbjct:   50 VQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPANTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNMQKADG-----DKEADDDDIPDLVAGENFEDKVE 153          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_CHAGB (Nascent polypeptide-associated complex subunit beta OS=Chaetomium globosum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.928e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 326
            V  I AIEEVN+FK D  +I F  PKV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q             ++DDDDE+P+LVAGE+FE   E
Sbjct:   51 VQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNM---------QQKKDDDDEIPDLVAGESFENKVE 150          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BT3L4_CHICK (Transcription factor BTF3 homolog 4 OS=Gallus gallus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.321e-20
Identity = 51/113 (45.13%), Postives = 79/113 (69.91%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTD 338
            VN I  IEEVN+ KDD  +I F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++        +++DD+VP+L   E F+ A++ + +
Sbjct:   48 VNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKSEDIDEEDDDVPDL--AENFDEASKNEAN 158          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_NEUCR (Nascent polypeptide-associated complex subunit beta OS=Neurospora crassa GN=egd-1 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.942e-20
Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 326
            V  I AIEEVN+FK D  +I F  PKV A++ ANT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N        ++ ++D++P+LVAGE FE+  E
Sbjct:   51 VQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPANTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNMQKN-------EKDAEEDDIPDLVAGENFESKVE 152          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_GIBZE (Nascent polypeptide-associated complex subunit beta OS=Gibberella zeae GN=EGD1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.907e-19
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   12 IFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFE 314
            I AIEEVN+FK D  +I F  PKV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G        +DDDE+P+LV GE FE
Sbjct:   63 IQAIEEVNMFKQDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNLQKEKG--------EDDDEIPDLVEGENFE 156          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_EMENI (Nascent polypeptide-associated complex subunit beta OS=Emericella nidulans GN=egd1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.614e-18
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPK------------VQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAE 326
            V  I AIEEVN+FK+D  +I F  PK            V AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N    A   ++DD+D++P+LV GE FE + +
Sbjct:   48 VQPIQAIEEVNMFKEDGNVIHFAAPKEERALTVGCEIKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ---AGEKKDDDEDDIPDLVEGENFEKSVD 165          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BTF3_CAEEL (Transcription factor BTF3 homolog OS=Caenorhabditis elegans GN=icd-1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.134e-18
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKT 335
            V  I  IEEVN+ KDD  +I F NPKVQ S+ ANT+ V+G+   K++ ++LPGI+NQLGP++L +L+KLA    K  P+         + +D++VPELV    F+AA++ +T
Sbjct:   55 VTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLKKLANNVTKLGPDG--------KGEDEDVPELVG--DFDAASKNET 156          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_CRYNE (Nascent polypeptide-associated complex subunit beta OS=Cryptococcus neoformans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.331e-17
Identity = 53/124 (42.74%), Postives = 80/124 (64.52%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQ--ASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQK--------QAPNAGTGAPTTQE-DDDDEVPELVAGETFEAAAEEKTD 338
            V  I  +EEVN+FK+D  ++ F  P+VQ  A++ +NT  + G  QTK+L +++PGI+NQLGPD+L NLR+LAE +Q          A + G GA   +E + DDE+P+LV  + F+ A  +K+D
Sbjct:   49 VQPITGVEEVNMFKEDGNVLHFGAPRVQVHAALPSNTLAIYGPGQTKELTELVPGILNQLGPDSLANLRRLAESYQSLTARQAAAAAGSGGEGAGEAKEGEGDDEIPDLV--DNFDEAEVKKSD 170          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: NACB_USTMA (Nascent polypeptide-associated complex subunit beta OS=Ustilago maydis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.858e-17
Identity = 48/114 (42.11%), Postives = 74/114 (64.91%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDDV-LIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ-KQAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEKTD 338
            V  +  +EEVN+FK+D  ++ F  PKV     +NT+ V G    K+L +++PGI+NQLGPD+L +LRKLAE +Q   A +A + A      DDD+VP++V  E F+ A +++T+
Sbjct:   50 VEPVSGVEEVNMFKEDGNVLHFAAPKVHGLPTSNTFAVYGNGVDKELTELVPGILNQLGPDSLASLRKLAESYQAMNAQHAASQAAAAGTKDDDDVPDVV--ENFDEADKKETE 161          
BLAST of FC926429 vs. ExPASy Swiss-Prot
Match: BT3L3_HUMAN (Transcription factor BTF3 homolog 3 OS=Homo sapiens GN=BTF3L3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.366e-16
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 3
Query:    3 VNAIFAIEEVNIFKDD-VLIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPEL 293
            VN I  IE+VN+F +   +I F NPK QAS+A NT+ ++G  + K++ ++LP +++QLG D+L +LR+LAE   KQ P  G     T  DDDD VPEL
Sbjct:   83 VNNISGIEKVNMFTNQGTVIHFNNPKFQASLAVNTFTITGHAEAKQVTEMLPSVLSQLGADSLTSLRRLAEVLPKQ-PVDGKAPLATGGDDDDGVPEL 179          
The following BLAST results are available for this feature:
BLAST of FC926429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACB_MAGGR5.928e-2149.54Nascent polypeptide-associated complex subunit bet... [more]
NACB_CHAGB5.928e-2148.62Nascent polypeptide-associated complex subunit bet... [more]
BT3L4_CHICK1.321e-2045.13Transcription factor BTF3 homolog 4 OS=Gallus gall... [more]
NACB_NEUCR2.942e-2046.79Nascent polypeptide-associated complex subunit bet... [more]
NACB_GIBZE1.907e-1949.02Nascent polypeptide-associated complex subunit bet... [more]
NACB_EMENI1.614e-1842.98Nascent polypeptide-associated complex subunit bet... [more]
BTF3_CAEEL6.134e-1844.64Transcription factor BTF3 homolog OS=Caenorhabditi... [more]
NACB_CRYNE2.331e-1742.74Nascent polypeptide-associated complex subunit bet... [more]
NACB_USTMA8.858e-1742.11Nascent polypeptide-associated complex subunit bet... [more]
BT3L3_HUMAN3.366e-1646.94Transcription factor BTF3 homolog 3 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YO09FM1 TF Citrus clementina cDNA clone KN0AAP5YO09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926429 ID=FC926429; Name=FC926429; organism=Citrus clementina; type=EST; length=457bp
GAGTGAATGCTATTTTTGCAATTGAGGAAGTTAACATTTTCAAGGATGAC
GTCCTTATTCAGTTCTTAAATCCCAAAGTACAAGCTTCAATTGCTGCCAA
CACATGGGTAGTTAGTGGTGCCCCACAAACCAAGAAGTTGCAGGATATTC
TCCCTGGAATTATCAATCAATTGGGGCCAGATAATTTGGACAACCTGAGG
AAGTTGGCGGAACAGTTTCAGAAGCAAGCACCTAATGCAGGAACTGGTGC
ACCCACGACTCAAGAGGACGACGACGATGAGGTCCCAGAGCTTGTGGCAG
GCGAGACGTTTGAAGCTGCCGCAGAGGAGAAAACAGACAAACCTGACGCT
GCCTCTTAGAGAGTTTTATCTAGAGGGACTTTGTGTTATTCAATATATTT
TCTATGCTTTTTGAGTTTTTATTTCACTTTTCCGAGTCCACTTTCTCTTG
TTTTATC
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