FC926431

Overview
NameFC926431
Unique NameFC926431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14916 contig Ccv1_Contig14916:3..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.905e-56
Identity = 112/197 (56.85%), Postives = 136/197 (69.04%), Query Frame = 2
Query:  113 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 703
            +P  LQD CVA N+  +GV+VNGKFCKDPK   A DF+ SGL  PGNT+   GV  T  +V+++PGLNTLG+   RID+AP G  PPH HPR SEIFLV++G L+VGFV+S++ N TL  KVL  GDVFVFP+GLI F  NIGKTNA   +A  SQ PG + I + VFG+ P I+P  L KAF LD   VK  Q  F
Sbjct:   26 EPSPLQDYCVATNET-NGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAFALDFNKVKYFQAVF 221          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.795e-56
Identity = 112/197 (56.85%), Postives = 134/197 (68.02%), Query Frame = 2
Query:  113 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 703
            DP  LQD CVA N+  +GV+VNG+FCKDPK     DF+ SGL  PGNT    G   T  +VE++PGLNTLG+   R D+AP G  PPH HPR S+IFLV++G L+VGFV+S++ N TL  KVL  GDVFVFP+GLIHF  NIG+TNA   SA  SQ PG + I D VFG+ P I+P  L KAF LD   VK LQ  F
Sbjct:   26 DPSPLQDYCVATNET-NGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQAVF 221          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.460e-55
Identity = 120/201 (59.70%), Postives = 147/201 (73.13%), Query Frame = 2
Query:  110 TDPGHLQDVCVA-INDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 703
            +DP  LQD CVA +N P   V VNG  CK+P  A A+DFF +  L KP +T N++G + T  NV Q+PGLNTLGIS  R+D+AP G  PPH HPRA+EIF VLEGTLYVGFVTS+  +N L++KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D KI+  LQ +F
Sbjct:   25 SDPSPLQDFCVADLNSP---VRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNP-DNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLLQAQF 221          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.195e-55
Identity = 112/201 (55.72%), Postives = 131/201 (65.17%), Query Frame = 2
Query:  110 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGK-AFQLDPKIVKDLQNKF 703
            TDP  LQD CV +N P DG+FVNG FCKDP     +DF F GL  P NT N LG   T      +PGLNTLGIS  R+D+AP+G  PPH HPRA+E+F+VLEGT YVGFVTS+  +  N L AKVLNKGDVFVFPQGLIHFQ NIG       S L+SQ PG +TIA+ VFG      P+ L +  F L P I   + + F
Sbjct:   23 TDPTQLQDFCVGVNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFG------PEHLSQLMFLLRPSISMRIWSSF 217          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.033e-53
Identity = 115/203 (56.65%), Postives = 137/203 (67.49%), Query Frame = 2
Query:  110 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 715
            +DP  LQD CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ D L KAFQ++   +  LQ +F   N
Sbjct:   24 SDPSPLQDFCVA--DKHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQAQFWENN 223          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.748e-53
Identity = 117/197 (59.39%), Postives = 141/197 (71.57%), Query Frame = 2
Query:  113 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSG-LGKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 694
            +P  LQD CVA  D    V VNG  CK+P    A+DFF +  L KP +TA N++G + T  NV +IPGLNTLGIS  R+DYAP G  PPH HPRA+EIF VLEGTLYVGFVTS+  +N L +KVLNKGDVFVFP+GLIHFQFN+     A A SA++SQ PG +TIA+ VF +NP I+ D L KAFQ+D KI+  LQ
Sbjct:   25 EPSPLQDFCVA--DLNSAVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNP-DNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQVDKKIIDLLQ 218          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.748e-53
Identity = 114/201 (56.72%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  110 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFF-SGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQL--NNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 703
            +DP  LQD CVA  D    VFVNG  CK+PK   A DFF    LG PGNT N  G   T   V ++PGLNTLGIS  RID+AP GQ PPH HPRA+EI  VL+GTL VGFVTS+Q    N    K+L  GDVFVFPQGLIHFQ N G   A A +AL+SQ PG +TIA+ VFG+ P I  D L KAF +D   V  +Q KF
Sbjct:   28 SDPSQLQDFCVA--DKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMIDKDQVDWIQAKF 226          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.143e-52
Identity = 114/203 (56.16%), Postives = 136/203 (67.00%), Query Frame = 2
Query:  110 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 715
            +DP  LQD CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:   23 SDPSPLQDFCVA--DKHSPVLVNGFACLDPKYVTADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.949e-52
Identity = 114/203 (56.16%), Postives = 136/203 (67.00%), Query Frame = 2
Query:  110 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 715
            +DP  LQD CVA  D    V VNG  C DPK   A+ FF + +       N++G + T  NV QIPGLNTLGIS  RIDYAP G+ PPH HPRA+EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:   23 SDPSPLQDFCVA--DMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC926431 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.324e-52
Identity = 119/206 (57.77%), Postives = 137/206 (66.50%), Query Frame = 2
Query:  113 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFF-SGLGKPGNTA-NRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 715
            DP  LQD CVA  D    V VNG  CKD K    +DFF  + L KP +T  ++ G + T  NV ++ GLNTLGIS  RIDYAP GQ PPH HPRA+EI  V EGTLYVGFVTS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D K V  LQ +F   N
Sbjct:   24 DPSPLQDFCVA--DRNSPVRVNGFPCKDAKDVNVDDFFLEANLDKPMDTTKSKAGSNVTLINVMKLTGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVFEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
The following BLAST results are available for this feature:
BLAST of FC926431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL15_ARATH2.905e-5656.85Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL14_ARATH3.795e-5656.85Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL82_ORYSJ2.460e-5559.70Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GLP1_MESCR4.195e-5555.72Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL87_ORYSJ1.033e-5356.65Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL81_ORYSJ8.748e-5359.39Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL41_ORYSJ8.748e-5356.72Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ1.143e-5256.16Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL810_ORYSJ1.949e-5256.16Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL121_ORYSJ3.324e-5257.77Germin-like protein 12-1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YO11FM1 TF Citrus clementina cDNA clone KN0AAP5YO11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926431 ID=FC926431; Name=FC926431; organism=Citrus clementina; type=EST; length=811bp
CTTGATTAAAGTTCTTGATAGGCACATCCTGTGACTTAATCACCATAAGG
TAATTCAATTTCTTATAGGTTTTGCCCTCTTGGCTTTGGCTTCTTCTTTG
GCCTCTGCCACTGACCCTGGCCATCTTCAAGATGTCTGTGTAGCCATCAA
TGACCCCAAGGATGGTGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCA
AGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAGGGCTAGGCAAGCCTGGA
AACACAGCAAATCGACTTGGTGTTGATGAAACAGATGCAAATGTTGAGCA
AATTCCAGGACTCAACACCCTTGGCATATCAGCATTCCGTATTGACTATG
CACCATATGGCCAAAGGCCACCTCACATTCACCCCCGTGCCAGCGAAATC
TTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTTTTGTGACATCAGACCA
ACTGAATAACACACTCATCGCAAAAGTTCTAAATAAGGGAGATGTTTTTG
TGTTTCCACAAGGTTTGATTCACTTCCAATTCAACATTGGAAAAACAAAT
GCAGCTGCCTATTCTGCTCTAAACAGCCAATTCCCGGGTGAAGTTACCAT
AGCCGACACAGTCTTTGGAGCCAATCCTTCAATCAATCCCGATTTTCTTG
GCAAGGCATTCCAGTTGGACCCAAAGATAGTGAAAGATCTTCAAAATAAG
TTCATTAATGGCAATTAGGAGAAGGAATTAATGAGCTTTAATATAAATGG
CCTCTTCACTAGTGGCTGTATTACTTTATCTCCAGATTAACATATCTTAA
ATTAAGTAAAA
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