FC926432

Overview
NameFC926432
Unique NameFC926432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.887e-21
Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  113 NNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTP-HEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAF 589
            NNCP+ VW A  P  G   L+RG  ++ +       AP      RIW RT C +   G+ SC TGDCG  L+C G G   P TLA+++L    N L  + +SLVDGFN+PMT  P +   G C  + C A++   CP +L+V   PG      C + C  F
Sbjct:   20 NNCPYTVWAASTPIGGGRRLDRGQTWVIN-------APRGTKMARIWGRTNCNFDGDGRGSCQTGDCGGVLQCTGWG-KPPNTLAEYALDQFSN-LDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRV---PG-----GCNNPCTTF 163          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.444e-20
Identity = 60/140 (42.86%), Postives = 81/140 (57.86%), Query Frame = 2
Query:   29 STSPIFISATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 442
            +TSP+     + LLL+ +A  +   T  + NNC F +WPA     G PV   GGF L S    S   PA   +GRIWARTGC++  G  SC TGDCG +L C+ L G  PATLA++++  G      Y +S++DGFN+ M
Sbjct:    2 ATSPV-----LFLLLAVFAAGASAATFNIKNNCGFTIWPA-----GIPV--GGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCS-LSGRPPATLAEYTIGGGSTQ-DFYDISVIDGFNLAM 127          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.444e-20
Identity = 59/162 (36.42%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  107 LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAF 589
            + N C + VW A  P  G   L  G  +       S   PA     R+WARTGC +   G+  C TGDCG  L+C   G A P TLA++ L+ G N+L  + +SLVDGFNVPM  +P    G    + C AD+   CP  L+ +          C + C  F
Sbjct:    5 ITNRCTYTVWAASVPVGGGVQLNPGQSW-------SVDVPAGTKGARVWARTGCNFDGSGRGGCQTGDCGGVLDCKAYG-APPNTLAEYGLN-GFNNLDFFDISLVDGFNVPMDFSP-TSNGCTRGISCTADINGQCPSELKTQG--------GCNNPCTVF 148          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 2
Query:   50 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 442
            SA + LLL+ +A  +   T  + NNC   +WPA     G PV   GGF L S    S   PA   +GRIWARTGC++  G  SC TGDCG +L C+ L G  PATLA+F++  G      Y +S++DGFN+ M
Sbjct:    4 SAVLFLLLAVFAAGASAATFNIKNNCGSTIWPA-----GIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCS-LSGRPPATLAEFTIGGGSTQ-DFYDISVIDGFNLAM 127          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 2
Query:   50 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 442
            SA + LLL+ +A  +   T  + NNC   +WPA     G PV   GGF L S    S   PA   +GRIWARTGC++  G  SC TGDCG +L C+ L G  PATLA+F++  G      Y +S++DGFN+ M
Sbjct:    4 SAVLFLLLAVFAAGASAATFNIKNNCGSTIWPA-----GIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCS-LSGQPPATLAEFTIGGGSTQ-DFYDISVIDGFNLAM 127          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = 2
Query:   23 MASTSPIFISATILLLLSSYAKASFILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSG-RIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAF 589
            M++   + +SA + +             ++NNCPF VW A  P  G   L+RG  ++ +        P     G R+W RTGC +   G+  C TGDC   L+C    G  P TLA+++L+   N+L  + +SLVDGFNV M  +P  G G    + C AD+   CP  L  R+P G      C + C  F
Sbjct:    1 MSTFKSLSLSALLFIAFLFTCARGATFNIINNCPFTVWAAAVPGGGKR-LDRGQNWIIN--------PGAGTKGARVWPRTGCNFDGAGRGKCQTGDCNGLLQCQAF-GQPPNTLAEYALNQ-FNNLDFFDISLVDGFNVAMEFSPTSG-GCTRGIKCTADINGQCPNEL--RAPGG------CNNPCTVF 171          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: THM2_THADA (Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 70/190 (36.84%), Postives = 93/190 (48.95%), Query Frame = 2
Query:   23 MASTSPIFISATILLLLSSYAKASFILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAH-GKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAF 589
            MA+T+  F     LLLL+    A+F   +VN C + VW A   + G   L+ GG  L+S    +         G+IWART C +   G+  C TGDCG  L+C    G  P TLA+FSL+    D     +S + GFNVPM  +P   +G C  V C AD++  CP  L+    PG G    C   C  F
Sbjct:    1 MAATTCFFFLFPFLLLLTLSRAATF--EIVNRCSYTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGRGICRTGDCGGLLQCKRF-GRPPTTLAEFSLNQYGKDY--IDISNIKGFNVPMDFSP-TTRG-CRGVRCAADIVGQCPAKLKA---PGGG----CNDACTVF 174          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-19
Identity = 60/150 (40.00%), Postives = 83/150 (55.33%), Query Frame = 2
Query:   50 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGV-CPVVGC 490
            SA + LLL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D   Y +S++DG+N+ M  +   G  + C   GC
Sbjct:    5 SAVLFLLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGYNLAMDFSCSTGVALKCRDSGC 142          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.019e-19
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 2
Query:   50 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 442
            SA + LLL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D   Y +S++DGFN+ M
Sbjct:    5 SAVLFLLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGFNLAM 125          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.287e-18
Identity = 63/177 (35.59%), Postives = 87/177 (49.15%), Query Frame = 2
Query:   62 LLLLSSYAKASFILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAF 589
            LLL+S+   A+F   ++N C + VW A  P  G   L+ G  +            A     RIW RT C + + G+  C TGDC   L+C G G   P TLA+++L+   N+L  Y +SLVDGFN+PM  +P      C  + C AD+   CP  L  R+P G      C + C  F
Sbjct:   14 LLLISTATAATF--EILNQCSYTVWAAASPGGGRR-LDAGQSW-------RLDVAAGTKMARIWGRTNCNFDSSGRGRCQTGDCSGGLQCTGWG-QPPNTLAEYALNQ-FNNLDFYDISLVDGFNIPMEFSPTSSN--CHRILCTADINGQCPNVL--RAPGG------CNNPCTVF 168          
The following BLAST results are available for this feature:
BLAST of FC926432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TPM1_SOLLC2.887e-2139.13Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
TLP_WHEAT5.444e-2042.86Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
P21_SOYBN5.444e-2036.42Protein P21 OS=Glycine max PE=1 SV=1[more]
PR1C_HORVU7.110e-2044.36Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
PR1A_HORVU7.110e-2044.36Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
TLP_ACTDE1.584e-1933.51Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
THM2_THADA3.529e-1936.84Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1[more]
RST3_AVESA4.609e-1940.00Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST1_AVESA6.019e-1942.86Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
OSL3_ARATH2.287e-1835.59Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YK21FM1 TF Citrus clementina cDNA clone KN0AAP13YK21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926432 ID=FC926432; Name=FC926432; organism=Citrus clementina; type=EST; length=590bp
TTAGTTTTTCTTATTAACGAAAATGGCCTCAACTTCGCCCATTTTCATTT
CAGCAACTATCCTTCTTCTCCTCAGCTCCTACGCCAAAGCAAGCTTCATA
CTGACCCTAGTCAACAACTGCCCCTTCCCCGTCTGGCCGGCCATCCAGCC
CAACGCCGGCCACCCAGTCCTCGAACGTGGCGGCTTCTATCTCCATAGCC
TCACCCACCGCTCCTTCCCCGCTCCGGCCCAGCACTGGTCGGGCCGGATC
TGGGCCAGAACCGGCTGCACCTACGCCCACGGCAAATTCTCCTGCGTCAC
GGGCGACTGCGGCCACCGCTTGGAATGCAACGGACTCGGCGGGGCGACTC
CAGCCACCCTGGCCCAGTTCAGCCTCCACCACGGCCACAACGACCTCTCC
TCCTACGGCGTCTCTCTAGTCGACGGCTTCAACGTCCCCATGACTGTCAC
CCCGCACGAGGGCAAGGGCGTCTGTCCGGTAGTGGGTTGTCGCGCTGACC
TGCTAGCCACGTGTCCTCAGAACCTGCAGGTGAGGTCACCGCCGGGTCAC
GGCCGCGTGGTGGCATGTAAGAGTGGGTGTGAGGCGTTTG
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