FC926432

Overview
NameFC926432
Unique NameFC926432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13842 contig Ccv1_Contig13842:12..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.901e-18
Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = 2
Query:   50 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 442
            SA +  LL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D   Y +S++DG+N+ M
Sbjct:    5 SAVLFFLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGYNLAM 125          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17
Identity = 54/144 (37.50%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  107 LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVR 535
            +VN C + VW A  P  G   L+ G  +  ++     P   Q    RIW RT C +   G+ +C TGDC   LEC G G A P TLA+F+L+  + D     +SLVDGFN+PM  +P  G   C  + C A +   CP  L+ +
Sbjct:   30 IVNKCTYTVWAAASPGGGRR-LDSGQSWSINVN----PGTVQ---ARIWGRTNCNFDGSGRGNCETGDCNGMLECQGYGKA-PNTLAEFALNQPNQDF--VDISLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQLKTQ 160          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.639e-16
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 2
Query:   26 ASTSPIFISATILLLLSSYAKASFILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEG 463
            A++S + +   +  L +  A A+   T+ N C F VWPA  P  G   L  G  +       +   PA   SGR+W RTGC++   G+ SC TGDC   L C  L G  P TLA+F++  G  D   Y +S++DG+NV M+ +   G
Sbjct:    5 ATSSAVLVVVLVATLAAGGANAA-TFTITNRCSFTVWPAATPVGGGVQLSPGQTW-------TINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCAGALSCT-LSGQKPLTLAEFTI-GGSQDF--YDLSVIDGYNVAMSFSCSSG 139          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.639e-16
Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   50 SATILLLLSSYAKASF---ILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 442
            S+T+L LL +   AS      T+ NNC + VWPA  P  G   L++G  +       +   PA   SGRIW RTGC++  G  SC TGDC   L C   G   PATLA+FS+   H+    Y +S++D +N+ M
Sbjct:    4 SSTVLFLLLAVFAASASAATFTITNNCGYTVWPAAIPVGGGQQLDQGQTW-------TLNVPAGTNSGRIWGRTGCSFNGGSGSCQTGDCAGALSCTLSG--QPATLAEFSIGGEHD---YYDISVIDVYNLAM 125          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 53/144 (36.81%), Postives = 70/144 (48.61%), Query Frame = 2
Query:  107 LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVR 535
            +VN C + VW A  P         GG  L+S    S          RIW RT C +   G+ +C TGDC   LEC G  G  P TLA+F+L+  + D     +SLVDGFN+PM  +P  G   C  + C A +   CP  L+ +
Sbjct:   30 IVNQCTYTVWAAASPG--------GGRQLNSGQSWSINVNPGTVQARIWGRTNCNFDGSGRGNCETGDCNGMLECQGY-GKPPNTLAEFALNQPNQDF--VDISLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQLKTQ 160          
BLAST of FC926432 vs. ExPASy Swiss-Prot
Match: THM1_THADA (Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 60/162 (37.04%), Postives = 77/162 (47.53%), Query Frame = 2
Query:  107 LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAH-GKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRADLLATCPQNLQVRSPPGHGRVVACKSGCEAF 589
            +VN C + VW A   + G   L+ GG  L+S    +         G+IWART C +   G   C TGDCG  L C    G  P TLA+FSL+    D     +S + GFNVPM  +P   +G C  V C AD++  CP  L+    PG G    C   C  F
Sbjct:    5 IVNRCSYTVWAAA--SKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF-GRPPTTLAEFSLNQYGKDY--IDISNIKGFNVPMNFSP-TTRG-CRGVRCAADIVGQCPAKLKA---PGGG----CNDACTVF 152          
The following BLAST results are available for this feature:
BLAST of FC926432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RST2_AVESA3.901e-1841.35Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
PRR1_TOBAC9.609e-1737.50Pathogenesis-related protein R major form OS=Nicot... [more]
TLP_ORYSJ1.639e-1636.05Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST4_AVESA1.639e-1639.55Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
PRR2_TOBAC2.141e-1636.81Pathogenesis-related protein R minor form OS=Nicot... [more]
THM1_THADA2.796e-1637.04Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YK21FM1 TF Citrus clementina cDNA clone KN0AAP13YK21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926432 ID=FC926432; Name=FC926432; organism=Citrus clementina; type=EST; length=590bp
TTAGTTTTTCTTATTAACGAAAATGGCCTCAACTTCGCCCATTTTCATTT
CAGCAACTATCCTTCTTCTCCTCAGCTCCTACGCCAAAGCAAGCTTCATA
CTGACCCTAGTCAACAACTGCCCCTTCCCCGTCTGGCCGGCCATCCAGCC
CAACGCCGGCCACCCAGTCCTCGAACGTGGCGGCTTCTATCTCCATAGCC
TCACCCACCGCTCCTTCCCCGCTCCGGCCCAGCACTGGTCGGGCCGGATC
TGGGCCAGAACCGGCTGCACCTACGCCCACGGCAAATTCTCCTGCGTCAC
GGGCGACTGCGGCCACCGCTTGGAATGCAACGGACTCGGCGGGGCGACTC
CAGCCACCCTGGCCCAGTTCAGCCTCCACCACGGCCACAACGACCTCTCC
TCCTACGGCGTCTCTCTAGTCGACGGCTTCAACGTCCCCATGACTGTCAC
CCCGCACGAGGGCAAGGGCGTCTGTCCGGTAGTGGGTTGTCGCGCTGACC
TGCTAGCCACGTGTCCTCAGAACCTGCAGGTGAGGTCACCGCCGGGTCAC
GGCCGCGTGGTGGCATGTAAGAGTGGGTGTGAGGCGTTTG
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