FC926436

Overview
NameFC926436
Unique NameFC926436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10353 contig Ccv1_Contig10353:61..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC926436 vs. ExPASy Swiss-Prot
Match: COMT1_ZINEL (Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.536e-16
Identity = 70/234 (29.91%), Postives = 107/234 (45.73%), Query Frame = 3
Query:   84 MSLKCAVELGIADAIHSHGR--PITLSELASALNI--QPTKTRSLFHFMRLLVHMGLFSKTKVDNHNE-QEEAYGLTPTSTLLIK-DKPYCLSPLVTGLLDQDYVSSFQHLSRWFKGNDLTL-----WESFGGLKFWDYLNQNTALTKRFNQAMESDSEMATLIVKDCKPIFQGLRSLVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYVVGDMFQFIPAAD 752
            M LK A+EL + + I   G    ++ SEL + L     P     +     LL    + + T  +  +   E  YGL P    LIK D    L+PL+  L++QD V     +  W+   D  L     +    G+  ++Y  ++    K FN  M + S M    + +    F GL++LVDVGGGTGA   +I+     +K    DLPH + D      +++V GDMF+ +P  D
Sbjct:   24 MVLKTAIELDLLETIAKAGPHGSVSSSELVAQLPKVNNPEAPVMIDRICSLLASYSVLTCTLKETADGCAERFYGLAPVCKFLIKNDAGVSLAPLL--LMNQDKVL----MESWYYLKDPVLDGGIPFNKAYGMSAFEYHGKDQRFNKVFNSGMFNHSTMTMKKIVELYNGFSGLKTLVDVGGGTGASLNMITSKHKSLKGINFDLPHVIADATTYQGIEHVGGDMFESVPKGD 251          
BLAST of FC926436 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.679e-15
Identity = 62/223 (27.80%), Postives = 97/223 (43.50%), Query Frame = 3
Query:   84 MSLKCAVELGIADAIHSHGRPITLSELASALNIQPTKTRSLFHFMRLLVHMGLFSKTKVDNHNEQEEAYGLTPTSTLLI-KDKPYCLSPLVTGLLDQDYVSSFQHLSRWFKGNDLTLWESFGGLKFWDYLNQNTALTKRFNQAMESDSEMATLIVKDCKPIFQGLRSLVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYVVGDMFQFIPAA 749
            M+L+ A+EL + + I   G    LS       I      +     R+L  +G  S   V    +    YGL   S  L+  +    + P++    D+  V SF ++        +  ++   G+ F+ Y  +   + K FNQAM + S +A   V      F  L+ LVDVGGG G     I    P I+    +LPH + D P    +++V GDMF+ +P A
Sbjct:   53 MALRAAIELNVFEIISQAGPDAQLSPSDIVAKIPTKNPSAAISLDRILRMLGASSILSVST-TKSGRVYGLNEESRCLVASEDKVSVVPMLLFTSDKAVVESFYNIKDVVLEEGVIPFDRTHGMDFFQYAGKEERVNKSFNQAMGAGSTIAFDEVFKVYKGFDNLKELVDVGGGIGTSLSNIVAKHPHIRGINFELPHVIGDAPDYPGVEHVPGDMFEGVPNA 274          
BLAST of FC926436 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.856e-14
Identity = 60/236 (25.42%), Postives = 103/236 (43.64%), Query Frame = 3
Query:   84 MSLKCAVELGIADAIHSHG----RPITLSELASALNIQPTKTRS----LFHFMRLLVHMGLFSKTKVDNHNEQEEAYGLTPTSTLLIKDKPYCLSPLVTGLLDQDYVSSFQHLSRWFKGNDLTL-----WESFGGLKFWDYLNQNTALTKRFNQAMESDSEMATLIVKDCKPIFQGLRSLVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYVVGDMFQFIPAAD 752
            M+LK A+ELG+ + +          +   E+ + +   P+   +    +   +RLL    +      D     E  Y   P    L  ++   +S     L++QD V     +  W+   D  L     +    G+  ++Y   +    + FN+ M++ S + T  + D    F+G+ +LVDVGGG GA    I+   P I     DLPH +++ P    +++V GDMF  +PA D
Sbjct:   31 MTLKNAIELGLLEVLQKEAGGGKAALAPEEVVARMPAAPSDPAAAAAMVDRMLRLLASYDVVRCQMEDRDGRYERRYSAAPVCKWLTPNEDG-VSMAALALMNQDKVL----MESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDFYTGFEGVSTLVDVGGGVGATLHAITSRHPHISGVNFDLPHVISEAPPFPGVRHVGGDMFASVPAGD 261          
BLAST of FC926436 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 64/227 (28.19%), Postives = 96/227 (42.29%), Query Frame = 3
Query:   84 MSLKCAVELGIADAIHSHGRPI--TLSELASALNIQ-PTKTRSLFHFMRLLVHMGLFSKTKVDNHNEQEEAYGLTPTSTLLIK-DKPYCLSPLVTGLLDQDYVSSFQHLSRWFKGNDLTLWESFGGLKFWDYLNQNTALTKRFNQAMESDSEMATLIVKDCKPIFQGLRSLVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYVVGDMFQFIPAAD 752
            M LK A EL I D     G  +  + SE+AS +  + P     L   +RLL    + +          +  YG  P    L   D    L PL+    D+  + S+ HL+ +     +    + G ++F DY   +      FNQ M   + +    + D    F  ++ LVDVGG  G    +I      IK    DLPH + D P    +++V G+MF+ IP AD
Sbjct:   36 MILKSAFELKILDIFSKAGEGVFVSTSEIASQIGAKNPNAPVLLDRMLRLLASHSVLTCKLQKGEGGSQRVYGPAPLCNYLASNDGQGSLGPLLVLHHDKVMMESWFHLNDYILEGGVPFKRAHGMIQF-DYTGTDERFNHVFNQGMAHHTILVMKKLLDNYNGFNDVKVLVDVGGNIGVNVSMIVAKHTHIKGINYDLPHVIADAPSYPGVEHVGGNMFESIPQAD 261          
BLAST of FC926436 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 59/232 (25.43%), Postives = 105/232 (45.26%), Query Frame = 3
Query:   90 LKCAVELGIADAIHSHGRP---ITLSELASALNIQPTKTRS------LFHFMRLLVHMG-LFSKTKVDNHNEQEEAYGLTPTSTLLIKDKPY-CLSPLVTGLLDQDYVSSFQHLSRWFKGNDLTLWESFGGLKFWDYLNQNTALTKRFNQAMESDSEMATLIVKDCKPIFQGLRSLVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYVVGDMFQFIPAAD 752
            L  A++L + + I     P   ++ SE+AS L   P  T+       L   +RLL     L S T+       E  YGL+     L+ D+    L+   T L     +  + +        D+ L+++  G+  ++++ ++  + + FN++M          + +    F+G+ +LVDVGGG+G    +I   +P IK    DLP  + + P    +++V GDMF  +P  D
Sbjct:   41 LNAAIDLNLFEIIAKATPPGAFMSPSEIASKL---PASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGD 269          
The following BLAST results are available for this feature:
BLAST of FC926436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
COMT1_ZINEL7.536e-1629.91Caffeic acid 3-O-methyltransferase OS=Zinnia elega... [more]
SMT_COPJA1.679e-1527.80(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
COMT1_MAIZE1.856e-1425.42Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
IMT1_MESCR4.572e-1328.19Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
CHOMT_MEDSA2.269e-1225.43Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP5YO14FM1 TF Citrus clementina cDNA clone KN0AAP5YO14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC926436 ID=FC926436; Name=FC926436; organism=Citrus clementina; type=EST; length=752bp
TTGAAAATGACGGGTTAACTGTAAGAGAGTTGTTTGAAGGTCAAGCTCAT
CTGTATAAGGGCATCGTTAAGAATTTAAGTTCTATGTCACTCAAATGTGC
GGTTGAGCTAGGCATAGCGGACGCAATTCACAGCCACGGACGACCAATCA
CTCTGTCTGAGTTAGCCTCAGCTCTCAACATTCAGCCTACAAAAACTCGA
AGTCTATTTCATTTCATGCGTCTGTTAGTTCACATGGGCTTGTTTTCAAA
AACCAAAGTTGACAACCACAACGAGCAAGAAGAAGCATATGGCCTCACAC
CTACTTCGACCCTGCTCATCAAAGATAAGCCCTACTGTTTGTCACCACTT
GTCACTGGATTGCTTGACCAAGATTATGTCTCTTCATTCCAGCATTTAAG
TAGGTGGTTCAAAGGGAACGATCTCACATTATGGGAATCTTTCGGCGGGT
TGAAGTTTTGGGACTATCTGAACCAGAACACTGCATTAACCAAGCGGTTC
AACCAAGCAATGGAAAGCGATTCTGAAATGGCAACCTTGATTGTCAAAGA
CTGCAAGCCAATCTTTCAAGGGTTGCGCTCCCTGGTTGATGTAGGAGGTG
GAACGGGTGCATTCGCGAGAATCATATCTGAAGCATTCCCCGGCATCAAG
TGCACAGTACTTGACCTCCCACATGCGGTCACTGACATGCCTCAGACTGA
CAACTTGAAGTACGTAGTGGGTGATATGTTTCAGTTTATTCCTGCGGCAG
AC
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