FC927058

Overview
NameFC927058
Unique NameFC927058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 167.548 bits (423), Expect = 1.963e-41
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +KK+ ET K YIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   48 SKKSVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSN 142          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 2.563e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 2.563e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   43 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.348e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.348e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.348e-41
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 2
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            KK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 KKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.348e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   42 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.348e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   56 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.348e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   56 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1_WHEAT (Histone H2B.1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 3.348e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   58 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 152          
The following BLAST results are available for this feature:
BLAST of FC927058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_SOLLC1.963e-4190.53Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]
H2B5_MAIZE2.563e-4190.53Histone H2B.5 OS=Zea mays PE=2 SV=3[more]
H2B4_MAIZE2.563e-4190.53Histone H2B.4 OS=Zea mays PE=3 SV=3[more]
H2B8_ORYSJ3.348e-4190.53Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI3.348e-4190.53Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSJ3.348e-4191.49Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B5_WHEAT3.348e-4190.53Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B2_ORYSJ3.348e-4190.53Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI3.348e-4190.53Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B1_WHEAT3.348e-4190.53Histone H2B.1 OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP2YJ09FM1 TF Citrus clementina cDNA clone KN0AAP2YJ09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927058 ID=FC927058; Name=FC927058; organism=Citrus clementina; type=EST; length=431bp
CGCGAAGAAGACTTTCGAGACGGACAAGACTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCTATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAATCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGATTGCTTGG
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