FC927058

Overview
NameFC927058
Unique NameFC927058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.662e-40
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   59 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.662e-40
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   59 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.662e-40
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   59 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.662e-40
Identity = 85/95 (89.47%), Postives = 89/95 (93.68%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK  ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   56 AKKGVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.662e-40
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   59 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.662e-40
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            AKK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   59 AKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 3.701e-40
Identity = 83/95 (87.37%), Postives = 90/95 (94.74%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +KK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   44 SKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 138          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.834e-40
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 2
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            KK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   60 KKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.834e-40
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 2
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            KK+ ET K YIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   60 KKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_TOBAC (Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 1.407e-39
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 2
Query:    2 AKKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            A+ + ET K YIF+VLK VHPDIGISSKAMGIMNSFINDIFEKLA+E+SRLA YNKKPTI+SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   52 AEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 146          
The following BLAST results are available for this feature:
BLAST of FC927058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_ORYSI1.662e-4088.42Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_ORYSJ1.662e-4088.42Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI1.662e-4088.42Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B2_WHEAT1.662e-4089.47Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]
H2B10_ORYSJ1.662e-4088.42Histone H2B.10 OS=Oryza sativa subsp. japonica GN=... [more]
H2B10_ORYSI1.662e-4088.42Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B3_WHEAT3.701e-4087.37Histone H2B.3 OS=Triticum aestivum PE=1 SV=3[more]
H2B7_ORYSJ4.834e-4088.30Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B7_ORYSI4.834e-4088.30Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B_TOBAC1.407e-3987.37Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP2YJ09FM1 TF Citrus clementina cDNA clone KN0AAP2YJ09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927058 ID=FC927058; Name=FC927058; organism=Citrus clementina; type=EST; length=431bp
CGCGAAGAAGACTTTCGAGACGGACAAGACTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCTATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAATCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGATTGCTTGG
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