FC927058

Overview
NameFC927058
Unique NameFC927058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.483e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 2.483e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.243e-36
Identity = 76/94 (80.85%), Postives = 84/94 (89.36%), Query Frame = 2
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            KK  E+   YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   22 KKRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B5_CHICK (Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            K   E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 KSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 2
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 2
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 2
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B2F_HUMAN (Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B2B_MOUSE (Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1_PONAB (Histone H2B type 1 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125          
The following BLAST results are available for this feature:
BLAST of FC927058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1F_MOUSE2.483e-3682.22Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h... [more]
H2B1B_MOUSE2.483e-3682.22Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ... [more]
H2B_LITVA3.243e-3680.85Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B5_CHICK4.235e-3679.79Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2[more]
H2B3B_MOUSE4.235e-3681.11Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN4.235e-3681.11Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]
H2B3A_MOUSE4.235e-3681.11Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ... [more]
H2B2F_HUMAN4.235e-3682.22Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF ... [more]
H2B2B_MOUSE4.235e-3682.22Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb ... [more]
H2B1_PONAB4.235e-3682.22Histone H2B type 1 OS=Pongo abelii PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP2YJ09FM1 TF Citrus clementina cDNA clone KN0AAP2YJ09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927058 ID=FC927058; Name=FC927058; organism=Citrus clementina; type=EST; length=431bp
CGCGAAGAAGACTTTCGAGACGGACAAGACTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCTATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAATCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGATTGCTTGG
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