FC927058 | Citrus Genome Database

Overview


Name	FC927058
Unique Name	FC927058
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	431

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1_CHICK (Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2

Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            K   E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 KSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1_BOVIN (Histone H2B type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 4.235e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B8_CHICK (Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 5.531e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 2

Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

The following BLAST results are available for this feature:

BLAST of FC927058 vs. ExPASy Swiss-Prot

BLAST of FC927058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205


Match Name	E-value	Identity	Description
H2B1_CHICK	4.235e-36	79.79	Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE...	[more]
H2B1_BOVIN	4.235e-36	82.22	Histone H2B type 1 OS=Bos taurus PE=1 SV=2	[more]
H2B1N_HUMAN	4.235e-36	82.22	Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ...	[more]
H2B1M_MOUSE	4.235e-36	82.22	Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ...	[more]
H2B1M_HUMAN	4.235e-36	82.22	Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ...	[more]
H2B1H_MOUSE	4.235e-36	82.22	Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ...	[more]
H2B1H_HUMAN	4.235e-36	82.22	Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ...	[more]
H2B1D_HUMAN	4.235e-36	82.22	Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ...	[more]
H2B1C_MOUSE	4.235e-36	82.22	Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h...	[more]
H2B8_CHICK	5.531e-36	82.22	Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP2YJ09FM1 TF Citrus clementina cDNA clone KN0AAP2YJ09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC927058 ID=FC927058; Name=FC927058; organism=Citrus clementina; type=EST; length=431bp
CGCGAAGAAGACTTTCGAGACGGACAAGACTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCTATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAATCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGATTGCTTGG