FC927058

Overview
NameFC927058
Unique NameFC927058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_DROSI (Histone H2B OS=Drosophila simulans GN=His2B PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2 
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +K  E+   YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   29 RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_DROSE (Histone H2B OS=Drosophila sechellia GN=His2B PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2 
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +K  E+   YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   29 RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_DROOR (Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2 
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +K  E+   YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   29 RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_DROME (Histone H2B OS=Drosophila melanogaster GN=His2B PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2 
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +K  E+   YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   29 RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_DROMA (Histone H2B OS=Drosophila mauritiana GN=His2B PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2 
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +K  E+   YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   29 RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_DROHY (Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2 
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +K  E+   YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   29 RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_DROER (Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 2 
Query:    5 KKTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            +K  E+   YI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   29 RKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B_CHITH (Histone H2B OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 2 
Query:    8 KTFETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            K  E+   YIFKVLKQVHPD G+SSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 KRKESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1K_HUMAN (Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC927058 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 9.435e-36
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:   17 ETDKTYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 286
            E+   Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
The following BLAST results are available for this feature:
BLAST of FC927058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_DROSI9.435e-3679.79Histone H2B OS=Drosophila simulans GN=His2B PE=3 S... [more]
H2B_DROSE9.435e-3679.79Histone H2B OS=Drosophila sechellia GN=His2B PE=3 ... [more]
H2B_DROOR9.435e-3679.79Histone H2B OS=Drosophila orena GN=His2B PE=3 SV=3[more]
H2B_DROME9.435e-3679.79Histone H2B OS=Drosophila melanogaster GN=His2B PE... [more]
H2B_DROMA9.435e-3679.79Histone H2B OS=Drosophila mauritiana GN=His2B PE=3... [more]
H2B_DROHY9.435e-3679.79Histone H2B OS=Drosophila hydei GN=His2B PE=3 SV=2[more]
H2B_DROER9.435e-3679.79Histone H2B OS=Drosophila erecta GN=His2B PE=3 SV=... [more]
H2B_CHITH9.435e-3680.65Histone H2B OS=Chironomus thummi thummi PE=3 SV=2[more]
H2B1K_HUMAN9.435e-3681.11Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK ... [more]
H2B1K_BOVIN9.435e-3681.11Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP2YJ09FM1 TF Citrus clementina cDNA clone KN0AAP2YJ09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927058 ID=FC927058; Name=FC927058; organism=Citrus clementina; type=EST; length=431bp
CGCGAAGAAGACTTTCGAGACGGACAAGACTTACATCTTCAAAGTCCTGA
AGCAGGTACATCCCGATATCGGAATCTCGAGCAAGGCTATGGGAATCATG
AACAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAG
GCTTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGA
CCGCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCT
GAGGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGT
TGCATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTT
TAGGCCTTTAATTTTACTAGATGAAATCGTTTTTATGTTTTGTGTTTTCA
AATCTTTGGTGGATTTTTAGGGATTGCTTGG
back to top