FC927891

Overview
NameFC927891
Unique NameFC927891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.743e-40
Identity = 95/196 (48.47%), Postives = 117/196 (59.69%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 589
            SHPGFGCWLS VDI+TQQSFE L +RAVA+VVDPIQSVKGKVVIDAFRLI+ Q  +LG EPRQ TSN+G+L  P++ ++IHGLN+HYYS  I  R                W D L L   D  SK      +E L L   Y KA +EE  L  +   +A VGR D ++ L E     +  N + +L   +   IF
Sbjct:  104 SHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVKGKVVIDAFRLIDNQLGVLGGEPRQVTSNIGYLKTPTLISIIHGLNKHYYSFNITCRKNDFEQKMLLNLHRKTWADNLKLG--DVRSKR-----EEALKLIESYGKAFEEEKNLAGKNPDMAKVGRIDYRRRLLEKCEESIMENTIYSLLYSIHRYIF 292          
BLAST of FC927891 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.562e-39
Identity = 85/203 (41.87%), Postives = 119/203 (58.62%), Query Frame = 2
Query:    2 SHPGFGCWLSGVDINTQQSFEALNQRAVALVVDPIQSVKGKVVIDAFRLINPQTMML-----GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELP------PEKMAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 577
            SHPGFGCWLS VD+NTQQSFEAL+ RAVA+VVDPIQSVKGKV++DAFR +NP  + +       EPRQTTSNLGHL KPS+ +++HGL   YYS+ + YR                W D L +  +    K  E+  + +  L   +NK + E  E P        +  +   G+ +AK+ L+   S+L++ ++   L  M++
Sbjct:  112 SHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMSTYSELEKKQEEKFKSINKLIAVFNKDIDEVKEKPIADKKGKTQEEVKKFGKINAKQQLQMITSSLLNDSLCHQLTAMIN 314          
The following BLAST results are available for this feature:
BLAST of FC927891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RPN11_ENCCU1.743e-4048.4726S proteasome regulatory subunit RPN11 OS=Encepha... [more]
YPT5_CAEEL9.562e-3941.87Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP4YH17FM1 TF Citrus clementina cDNA clone KN0AAP4YH17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927891 ID=FC927891; Name=FC927891; organism=Citrus clementina; type=EST; length=608bp
CTCACATCCTGGCTTTGGATGCTGGCTCTCTGGTGTTGACATAAACACAC
AGCAGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTTTGGTTGTGGAT
CCAATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCCTTCCGCTTGAT
TAATCCCCAAACCATGATGCTTGGCCAAGAACCACGGCAGACAACTTCCA
ATCTTGGTCATCTTAATAAGCCATCCATCCAAGCATTGATCCATGGCTTG
AATAGACATTATTATTCTATTGCCATCAATTACAGGAAGAATGAACTTGA
AGAAAAGATGCTACTAAATCTGCACAAGAAGAAATGGACTGATGGATTAA
CACTTCATCGCTTTGATTGCCATTCCAAAACCAATGAACAGACTGTCCAG
GAGATGTTAAATTTGGCTGTCAAATATAACAAGGCAGTTCAAGAAGAAGA
CGAGCTGCCGCCAGAGAAGATGGCCATTGCTAATGTGGGAAGGCAAGATG
CAAAGAAGCACCTTGAGGAACATGTCTCCAACTTGATGTCCTCAAACATA
GTTCAAACTTTGGGAACCATGCTTGATACAGTCATATTCCAGATGTTGGT
TTGTTTTC
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