FC927894

Overview
NameFC927894
Unique NameFC927894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.647e-62
Identity = 107/189 (56.61%), Postives = 136/189 (71.96%), Query Frame = 2
Query:  128 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            ++S+E+F+ LL +RND  CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYCF  E+   + YC P+  +PC    KY+GRGPIQLS+NYNY              NNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGY
Sbjct:   89 VVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY--GPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGY 275          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.987e-62
Identity = 109/192 (56.77%), Postives = 137/192 (71.35%), Query Frame = 2
Query:  116 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP-NYPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            ++G+++   +FD +L+YRND RC   GFYTYDAFI AA++F GFG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYCF+SE +    YC P ++PC    KYYGRGPIQL+ NYNY              NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGY
Sbjct:   79 DVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGY 268          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.987e-62
Identity = 111/192 (57.81%), Postives = 134/192 (69.79%), Query Frame = 2
Query:  119 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            +G I+ R++F+ LL +RND  CPARGFYTY+AF+ AA AFP FG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF  E +PPSDYC P+  +PC    KYYGRGPIQLS+N+NY              +NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGY
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGY 278          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.157e-60
Identity = 112/192 (58.33%), Postives = 133/192 (69.27%), Query Frame = 2
Query:  119 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            +  I+SR +FD +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYCF  E    S+YC P+  +PC  GK YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+
Sbjct:   80 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGF 269          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.720e-59
Identity = 110/192 (57.29%), Postives = 130/192 (67.71%), Query Frame = 2
Query:  119 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            +  I+SR  FD +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF  E    SDYC P+  +PC    +YYGRGPIQLS NYNY               NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+
Sbjct:   25 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGF 214          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 227.254 bits (578), Expect = 6.059e-59
Identity = 111/192 (57.81%), Postives = 131/192 (68.23%), Query Frame = 2
Query:  119 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            +  I+SR +FD +L +RND  C A+GFYTYDAF+ AA AF GFG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYCF  E    S+YC P+  +PC  GK YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+
Sbjct:   77 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGF 266          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.350e-58
Identity = 109/192 (56.77%), Postives = 129/192 (67.19%), Query Frame = 2
Query:  119 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            +  IIS   FD +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF  E    +DYC P+  +PC    +YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+
Sbjct:   25 VSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGF 214          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.927e-58
Identity = 106/194 (54.64%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  119 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISE--VSPPSDYC--DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            +  I+SR +FD +L +RND  CPA+ FYTYDAF+ AA AFP F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E   +  SDYC     +PC    KYYGRGPIQ+S+NYNY              +NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGY
Sbjct:   79 VASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGY 270          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 6.699e-58
Identity = 106/193 (54.92%), Postives = 132/193 (68.39%), Query Frame = 2
Query:  119 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCD--PNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            +  IIS  +FD +L +RND+ C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYCF  E +  +  YC+  P +PC    KYYGRGPIQ+++NYNY              NNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGY
Sbjct:   76 VASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGY 266          
BLAST of FC927894 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.069e-55
Identity = 102/188 (54.26%), Postives = 132/188 (70.21%), Query Frame = 2
Query:  119 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGY 682
            +G II+R MF+ +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC ++E++P     DP       YYGRGPIQL+  YNY              NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGY
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITP----SDP------PYYGRGPIQLTHKYNYQ--LAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGY 201          
The following BLAST results are available for this feature:
BLAST of FC927894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI9_ORYSJ7.647e-6256.61Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA9.987e-6256.77Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_ORYSJ9.987e-6257.81Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE7.157e-6058.33Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU2.720e-5957.2926 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU6.059e-5957.8126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE1.350e-5856.77Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_ORYSJ3.927e-5854.64Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ6.699e-5854.92Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ1.069e-5554.26Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP4YH20FM1 TF Citrus clementina cDNA clone KN0AAP4YH20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927894 ID=FC927894; Name=FC927894; organism=Citrus clementina; type=EST; length=684bp
GTCCTTACTACTTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGCTCAG
CACAGAACTGTGGAAGCGGCGTTGTGTACGGTGGACGTGATACCGGCCAT
GGGACGCATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGA
TGACTTGCTTGAGTATAGAAATGATGAACGATGCCCTGCCAGAGGCTTCT
ACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGT
AACTCTGGAAATGAAACCATGCGTAAAAGAGAAATCGCTGCCTTTTTTGC
CCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGCG
AATATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGCCCTCCGTCCGAC
TACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCC
AATTCAACTCTCTTGGAATTACAATTACTTACGGTGCGGAGAAGGCCTAG
GGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCA
GTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACC
AAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCCA
ATGACGTAAACGCCGGGCGGCTTCCGGGATACGG
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