FC927901

Overview
NameFC927901
Unique NameFC927901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.405e-32
Identity = 68/147 (46.26%), Postives = 94/147 (63.95%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 445
            APFF ++GA +A + + +GAAYGTAKS + + SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   14 APFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.405e-32
Identity = 68/147 (46.26%), Postives = 94/147 (63.95%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 445
            APFF ++GA +A + + +GAAYGTAKS + + SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   14 APFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVQAASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.397e-32
Identity = 73/147 (49.66%), Postives = 94/147 (63.95%), Query Frame = 2
Query:    8 PFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            PFF  +GA +A++ S +GAAYGTAKSG  +A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+ G   +   Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   14 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA-GALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 73/148 (49.32%), Postives = 94/148 (63.51%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            A FF  +GA AA+V S +GAAYGTAKSG  +A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   11 ASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 72/148 (48.65%), Postives = 97/148 (65.54%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            +PFF  +GA +A+V S +GAAYGTAKSG+ +++M VMRPEL+MK I+PVVMAG++ IYGL++AV+I+ G   +A +Y L+ G+                  AIGIVGDAGVR  AQQP+L+VGM            YGLIV I L ++
Sbjct:   10 SPFFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIA-GKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVAIFLYTK 156          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 73/148 (49.32%), Postives = 94/148 (63.51%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            A FF  +GA AA+V S +GAAYGTAKSG  +A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   11 ASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL2_YEAST (V-type proton ATPase subunit c' OS=Saccharomyces cerevisiae GN=VMA11 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 69/148 (46.62%), Postives = 96/148 (64.86%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            APFF F G  AA+VLSC+GAA GTAKSG+ +A +G  +PEL+MKS++PVVM+G+L IYGL++AV+I+  ++P  + Y LF+G+                  AIG+VGD GVR    QP+LFVG+            YG+IV +IL++R
Sbjct:   15 APFFGFAGCAAAMVLSCLGAAIGTAKSGIGIAGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLIAGNLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGMVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNTR 161          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.088e-32
Identity = 74/146 (50.68%), Postives = 93/146 (63.70%), Query Frame = 2
Query:   11 FFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            FF  +GA AA+V S +GAAYGTAKSG  +A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N   +   LF  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   12 FFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL2_KLULA (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Kluyveromyces lactis GN=VMA11 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.339e-32
Identity = 67/148 (45.27%), Postives = 96/148 (64.86%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            APFF F G   A++LSC+GAA GTAKSG+ ++ +G  +PEL+MKS++PVVM+G+L +YGL++AV+I+ G++P  + Y LF+G+                  AIGIVGD GVR    QP+LFVG+            YG+IV +IL++R
Sbjct:   15 APFFGFAGCAFAMILSCLGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILAVYGLVVAVLIAGGLSP-TEDYTLFNGFMHLSCGLCVGFACLSSGYAIGIVGDVGVRKYMHQPRLFVGIVLILIFSEVLGLYGMIVALILNTR 161          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.973e-32
Identity = 73/148 (49.32%), Postives = 93/148 (62.84%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            A FF  +GA AA+V S +GAAYGTAKSG  +A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   11 ASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
The following BLAST results are available for this feature:
BLAST of FC927901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
VATL2_CAEEL1.405e-3246.26V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR1.405e-3246.26V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL_DROME2.397e-3249.66V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP3.130e-3249.32V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEPNO3.130e-3248.65V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN3.130e-3249.32V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_YEAST3.130e-3246.62V-type proton ATPase subunit c' OS=Saccharomyces c... [more]
VATL_TORMA4.088e-3250.68V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_KLULA5.339e-3245.27V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_HUMAN6.973e-3249.32V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YE02FM1 TF Citrus clementina cDNA clone KN0AAP12YE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927901 ID=FC927901; Name=FC927901; organism=Citrus clementina; type=EST; length=625bp
AACCGCTCCTTTCTTCCGCTTTCTCGGCGCCCCTGCCGCCCTAGTCCTTT
CCTGTATGGGAGCCGCCTACGGAACGGCCAAGAGTGGCCTCCGTGTGGCC
TCCATGGGAGTGATGAGGCCGGAGCTTGTGATGAAATCGATCGTGCCCGT
TGTTATGGCGGGAGTTTTGGGTATTTACGGTTTGATTATTGCTGTTATTA
TTAGTACCGGAATTAACCCTAAGGCCCAATCTTATTACCTTTTCGATGGC
TACGCGCATCTCTCTTCTGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGC
TGGTATGGCAATTGGGATCGTCGGTGATGCTGGTGTCAGAGCCAATGCTC
AACAGCCGAAGCTTTTCGTTGGGATGATCCTCATTCTGATCTTTGCTGAA
GCGCTGGCACTTTATGGACTTATTGTTGGTATCATTCTTTCTTCTCGTGC
TGGTCCGTCCAGAGCAGACTAGAAGAGGATGCTTTGCTTGGTGGTTATTT
GGCCTGTTGTGTTCCATTAAGAAGAATTCAGTTCATATTGCCTGTGACGG
GAGGTGGTAGTCTGCGTTGGGTAGTGTTTTTCTTTTTCCACTTAAAAGTT
ATTGTCCGTGGTGTGATTGTTCCAC
back to top