FC927901

Overview
NameFC927901
Unique NameFC927901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 60/146 (41.10%), Postives = 91/146 (62.33%), Query Frame = 2
Query:   11 FFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            FF F G  A++V SC+GA YGTA +G  +A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  ++P    Y LF G+                  AIG+VGD GV++  +Q ++FV M            YGLIVG+IL ++
Sbjct:   12 FFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 60/151 (39.74%), Postives = 88/151 (58.28%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 451
            APF    G  AA++    GAAYGTAKSG+ +A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    Q Y LF+G+                   IGIVGD GVR+   Q ++FVGM            YGLIV +IL++++
Sbjct:   15 APFIGMAGIAAAMIFGSAGAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVRSFMLQSRIFVGMVLILIFGEVLGLYGLIVALILNTKS 165          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.467e-26
Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = 2
Query:    8 PFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 445
            PFF  +G  A++V +  G AYGTAKS + ++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +                 MAIGI GD GVR  AQQPKLFVGM            YG IV +I++S
Sbjct:   19 PFFGSMGITASIVFTVFGGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVRGAAQQPKLFVGMLICLIFSEALALYGFIVALIMAS 162          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 60/147 (40.82%), Postives = 85/147 (57.82%), Query Frame = 2
Query:    5 APFFRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAQSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 445
            +PFF  +G  A++V +  G AYGTAKS + ++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +                 M+IGI GD GVR  AQQPKLFV M            YG IV +I+++
Sbjct:   16 SPFFGSMGITASIVFTVFGGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVRGAAQQPKLFVSMLICLIFSEALALYGFIVALIMAA 160          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATO_HUMAN (V-type proton ATPase 21 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 47/157 (29.94%), Postives = 76/157 (48.41%), Query Frame = 2
Query:    2 TAPF-FRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS------TGINPKAQSYYLFD-GYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            T+PF +  LG   A+ LS +GAA+G   +G  +   GV  P +  K++V ++    + IYG+I+A++IS      +  +PKA  +  +  GY                 + +GIVG     A+AQ P LFV +            +G+IV I+ +SR
Sbjct:   44 TSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSR 200          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATO_BOVIN (V-type proton ATPase 21 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 47/157 (29.94%), Postives = 76/157 (48.41%), Query Frame = 2
Query:    2 TAPF-FRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS------TGINPKAQSYYLFD-GYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            T+PF +  LG   A+ LS +GAA+G   +G  +   GV  P +  K++V ++    + IYG+I+A++IS      +  +PKA  +  +  GY                 + +GIVG     A+AQ P LFV +            +G+IV I+ +SR
Sbjct:   44 TSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSR 200          
BLAST of FC927901 vs. ExPASy Swiss-Prot
Match: VATO_MOUSE (V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 2
Query:    2 TAPF-FRFLGAPAALVLSCMGAAYGTAKSGLRVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIS------TGINPKAQSYYLFD-GYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 448
            T+PF +  LG   A+ LS +GAA+G   +G  +   GV  P +  K++V ++    + IYG+I+A++IS      +   PKA  +  +  GY                 + +GIVG     A+AQ P LFV +            +G+IV I+ +SR
Sbjct:   44 TSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATEPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSR 200          
The following BLAST results are available for this feature:
BLAST of FC927901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
VATL2_SCHPO3.960e-2741.10V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_NEUCR1.965e-2639.74V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTHI7.467e-2641.78V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ENTDI3.706e-2540.82V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATO_HUMAN1.367e-1129.94V-type proton ATPase 21 kDa proteolipid subunit OS... [more]
VATO_BOVIN1.367e-1129.94V-type proton ATPase 21 kDa proteolipid subunit OS... [more]
VATO_MOUSE1.786e-1129.94V-type proton ATPase 21 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE02FM1 TF Citrus clementina cDNA clone KN0AAP12YE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927901 ID=FC927901; Name=FC927901; organism=Citrus clementina; type=EST; length=625bp
AACCGCTCCTTTCTTCCGCTTTCTCGGCGCCCCTGCCGCCCTAGTCCTTT
CCTGTATGGGAGCCGCCTACGGAACGGCCAAGAGTGGCCTCCGTGTGGCC
TCCATGGGAGTGATGAGGCCGGAGCTTGTGATGAAATCGATCGTGCCCGT
TGTTATGGCGGGAGTTTTGGGTATTTACGGTTTGATTATTGCTGTTATTA
TTAGTACCGGAATTAACCCTAAGGCCCAATCTTATTACCTTTTCGATGGC
TACGCGCATCTCTCTTCTGGCCTCGCTTGTGGCCTTGCTGGTCTCTCCGC
TGGTATGGCAATTGGGATCGTCGGTGATGCTGGTGTCAGAGCCAATGCTC
AACAGCCGAAGCTTTTCGTTGGGATGATCCTCATTCTGATCTTTGCTGAA
GCGCTGGCACTTTATGGACTTATTGTTGGTATCATTCTTTCTTCTCGTGC
TGGTCCGTCCAGAGCAGACTAGAAGAGGATGCTTTGCTTGGTGGTTATTT
GGCCTGTTGTGTTCCATTAAGAAGAATTCAGTTCATATTGCCTGTGACGG
GAGGTGGTAGTCTGCGTTGGGTAGTGTTTTTCTTTTTCCACTTAAAAGTT
ATTGTCCGTGGTGTGATTGTTCCAC
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