FC927918 | Citrus Genome Database

Overview


Name	FC927918
Unique Name	FC927918
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	428

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRP8 (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M18 GN=atpB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.729e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGARRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRPZ (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHSLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRPG (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRPF (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRPD (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRPC (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRPB (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRP6 (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M6 GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRP3 (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M3 GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

[Close]

BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_STRP1 (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M1 GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.176e-24
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 2

Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  V  DM+GRIF+G G+PID
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPID 100

The following BLAST results are available for this feature:

BLAST of FC927918 vs. ExPASy Swiss-Prot

BLAST of FC927918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148


Match Name	E-value	Identity	Description
VATB_STRP8	4.729e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRPZ	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRPG	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRPF	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRPD	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRPC	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRPB	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRP6	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRP3	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]
VATB_STRP1	6.176e-24	55.00	V-type ATP synthase beta chain OS=Streptococcus py...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP12YE12FM1 TF Citrus clementina cDNA clone KN0AAP12YE12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC927918 ID=FC927918; Name=FC927918; organism=Citrus clementina; type=EST; length=428bp
CCCTCTCCCTCTCTTTTTCTCTCTCTCTCTCTCTCACTCACAGAGATCAC
AAGAAAGACCAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAAC
AATGTTGACATGGAGGAGGGTACTCTGGAAGTCGCCATGGAGTACAGAAC
GGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGAC
CCAAATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGA
CGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTT
TGAAGGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAG
GGGAGGTTCTGAAGACTCCTGTCCCATTGGATATGCTTGGGCGCATTTTT
AATGGTTCTGGGAAACCCATTGATAATG