FC927918

Overview
NameFC927918
Unique NameFC927918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length428
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_THEP3 (V-type ATP synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=atpB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 48/95 (50.53%), Postives = 73/95 (76.84%), Query Frame = 2
Query:  140 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            EY+TV  + GPL++++KV+G KY E+V I  G G +RRGQVLEV+G+KA+VQ+FEG++G++     V+F G+ ++  V +DMLGR+F+G G+P D
Sbjct:    4 EYKTVREIVGPLMLVEKVEGVKYNELVEIETGTGEIRRGQVLEVNGDKALVQLFEGSTGLNINDCKVRFVGKSIELGVSIDMLGRVFDGLGRPRD 98          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_METBA (V-type ATP synthase beta chain OS=Methanosarcina barkeri GN=atpB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.521e-22
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  140 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            EY+T+T +AGPLV ++K +   Y EIV I L DGT RRG+VL+   +  V+Q+FEGT+G+D K   V FTGE LK P  +D+LGRI +GSG+P+D
Sbjct:    4 EYKTITQIAGPLVFVEKTEPVGYKEIVTINLPDGTTRRGEVLDSSSDIVVIQIFEGTTGLD-KECGVVFTGETLKLPASIDLLGRILSGSGEPLD 97          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_METM6 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=atpB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.987e-22
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  V  DMLGRIFNG+GKP+D
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGVAYGEIVDITTPNGEKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLD 103          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_METB6 (V-type ATP synthase beta chain OS=Methanoregula boonei (strain 6A8) GN=atpB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.987e-22
Identity = 52/95 (54.74%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  140 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            EYRT+T +AGPLV ++K +   Y E+VNI L DGT++RGQVL+   +  VVQ+FE T+GI  + + V+FTGE +K PV  +MLGRI +G GKPID
Sbjct:    3 EYRTITKIAGPLVFVEKTEPIGYQELVNIVLSDGTIKRGQVLDTSDDLVVVQIFETTTGI-GRDSGVRFTGETIKMPVGREMLGRILSGGGKPID 96          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_META3 (V-type ATP synthase beta chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=atpB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.987e-22
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 2
Query:  122 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            +LE  +EY +V+ +AGPL++++ +KG  Y EIV+I    G  R GQVLE   + AVVQVFEGT+ ++   T ++F GE  K  V  DMLGRIFNG+GKP+D
Sbjct:    3 SLEKNIEYTSVSSIAGPLIVVEGIKGVAYGEIVSITCPSGEKRTGQVLEAREDVAVVQVFEGTTALNTSETKIRFVGETAKLGVSTDMLGRIFNGAGKPLD 103          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_METST (V-type ATP synthase beta chain OS=Methanosphaera stadtmanae (strain DSM 3091) GN=atpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.595e-22
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 2
Query:   98 NNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            N+VD++        EY TV+ VAGPL+++  V+G  Y EIV I    G  R GQVLEV  + AVVQVFEGTS ++ + T V+FTGE  K  +  DMLGRIFNG GKPID
Sbjct:    2 NDVDIK------TREYTTVSEVAGPLMVVQGVEGAAYNEIVEIETPAGENRTGQVLEVKEDIAVVQVFEGTSDLNTESTKVRFTGETAKIGLSTDMLGRIFNGIGKPID 104          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_METMP (V-type ATP synthase beta chain OS=Methanococcus maripaludis GN=atpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.595e-22
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  V  DMLGRIFNG+GKP+D
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLD 103          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_METM7 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=atpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.595e-22
Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:  125 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  V  DMLGRIFNG+GKP+D
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLD 103          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_METBF (V-type ATP synthase beta chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=atpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.595e-22
Identity = 50/95 (52.63%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  140 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            EY+T+T +AGPLV ++K +   Y EIV I + DGT RRG+VL+   +  V+Q+FEGT+G+D K   V FTGE LK P  +D+LGRI +GSG+P+D
Sbjct:    4 EYKTITQIAGPLVFVEKTEPVGYKEIVTINMPDGTTRRGEVLDSSSDIVVIQIFEGTTGLD-KECGVVFTGETLKLPASIDLLGRILSGSGEPLD 97          
BLAST of FC927918 vs. ExPASy Swiss-Prot
Match: VATB_FUSNN (V-type ATP synthase beta chain OS=Fusobacterium nucleatum subsp. nucleatum GN=atpB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.595e-22
Identity = 50/95 (52.63%), Postives = 73/95 (76.84%), Query Frame = 2
Query:  140 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVPLDMLGRIFNGSGKPID 424
            EY++V  V GPL+I++ V+G KY E+V I+   G  RRG+VLE+DG++A++Q+FEG++GI+ K TTV+F G+ L+  V  DM+GRIF+G G PID
Sbjct:    4 EYKSVQEVVGPLMIVEGVEGIKYEELVEIQTQTGEKRRGRVLEIDGDRAMIQLFEGSAGINLKDTTVRFLGKPLELGVSEDMIGRIFDGLGNPID 98          
The following BLAST results are available for this feature:
BLAST of FC927918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
VATB_THEP31.165e-2250.53V-type ATP synthase beta chain OS=Thermoanaerobact... [more]
VATB_METBA1.521e-2253.68V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_METM61.987e-2252.00V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_METB61.987e-2254.74V-type ATP synthase beta chain OS=Methanoregula bo... [more]
VATB_META31.987e-2250.50V-type ATP synthase beta chain OS=Methanococcus ae... [more]
VATB_METST2.595e-2253.21V-type ATP synthase beta chain OS=Methanosphaera s... [more]
VATB_METMP2.595e-2252.00V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_METM72.595e-2252.00V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_METBF2.595e-2252.63V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_FUSNN2.595e-2252.63V-type ATP synthase beta chain OS=Fusobacterium nu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YE12FM1 TF Citrus clementina cDNA clone KN0AAP12YE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC927918 ID=FC927918; Name=FC927918; organism=Citrus clementina; type=EST; length=428bp
CCCTCTCCCTCTCTTTTTCTCTCTCTCTCTCTCTCACTCACAGAGATCAC
AAGAAAGACCAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAAC
AATGTTGACATGGAGGAGGGTACTCTGGAAGTCGCCATGGAGTACAGAAC
GGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGAC
CCAAATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGA
CGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTT
TGAAGGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAG
GGGAGGTTCTGAAGACTCCTGTCCCATTGGATATGCTTGGGCGCATTTTT
AATGGTTCTGGGAAACCCATTGATAATG
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