FC928202

Overview
NameFC928202
Unique NameFC928202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.584e-43
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.584e-43
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.375e-43
Identity = 84/124 (67.74%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.818e-43
Identity = 83/124 (66.94%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRES KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.282e-42
Identity = 82/124 (66.13%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P  + WM RMR+L+RLLR+YRE+ KID  MYH LY
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.187e-42
Identity = 79/124 (63.71%), Postives = 104/124 (83.87%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M +L+LQKRL+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  ++A+RKGRH+GYGKR+GT  AR+P   LW+ RMRVL+ LLR+YR++ K+D  +YH+LY
Sbjct:    1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.312e-42
Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            MVSLKLQKRL+AS+LKCG+ +VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+ ILW+ R+RVL+RLL+KYRE+ KID   Y +LY
Sbjct:    1 MVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 159.073 bits (401), Expect = 6.586e-39
Identity = 76/124 (61.29%), Postives = 99/124 (79.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR R    +KR+GRHSGYGKRKGTREARLP+ ++W+ R+RVL+RLL KYR++ KID  +YH LY
Sbjct:    1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.288e-26
Identity = 58/124 (46.77%), Postives = 86/124 (69.35%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M +LK+Q+R++A +LKCG  +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RAR   + K+KGRH G G RKG + AR+    LW+  +R L+R LRK +E  KID   Y  LY
Sbjct:    1 MNTLKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.748e-26
Identity = 56/124 (45.16%), Postives = 85/124 (68.55%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M +LK+Q+R++A +LKCG  ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RAR   + K+KGRH G G RKG + AR+    LW+  +R L++ LRK +E  KID   Y  LY
Sbjct:    1 MKTLKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLY 124          
The following BLAST results are available for this feature:
BLAST of FC928202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL19_HUMAN2.584e-4366.9460S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN2.584e-4366.9460S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_XENLA3.375e-4367.7460S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_ICTPU9.818e-4366.9460S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DANRE1.282e-4266.1360S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_CAEEL2.187e-4263.7160S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19_DICDI8.312e-4264.5260S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_YEAST6.586e-3961.2960S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRHO1.288e-2646.7750S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]
RL19_PYRAB3.748e-2645.1650S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ06FM1 TF Citrus clementina cDNA clone KN0AAP12YJ06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928202 ID=FC928202; Name=FC928202; organism=Citrus clementina; type=EST; length=403bp
AGAGAGAGAGGGTTTTAGAAGAGAAGAGAAAATGGTGTCGTTGAAGTTAC
AGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGTCAAGGTCTGG
CTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAGAA
CATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGA
TCCACTCCCGTTCTCGTGCTCGCAGAATGAAGGACGCCAAGAGGAAGGGC
CGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGCGAGGCTTCC
CACCTAAATCCTCTGGATGATAAGGATGCGTGTGCTCAAGCGGTTGCTCC
GCAAATACCGTGAGTCGAACAAAATTGACTAGCCCATGTACCATGACCTG
TAC
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