FC928202

Overview
NameFC928202
Unique NameFC928202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_PYRFU (50S ribosomal protein L19e OS=Pyrococcus furiosus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.069e-25
Identity = 52/124 (41.94%), Postives = 84/124 (67.74%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M +LK+Q+R++A +LKCG  ++W+DP  +++++ A +R++I++L+K+G I +KP K  SR RA+   + K+KGRH G G RKG + AR+    LW+  +R L++ LRK +   KID   Y  LY
Sbjct:    1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_ARCFU (50S ribosomal protein L19e OS=Archaeoglobus fulgidus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.206e-24
Identity = 54/124 (43.55%), Postives = 82/124 (66.13%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            ++ L LQ+RL+ASVLKCG  +VW DP  + +I+ A ++Q+IR+L++ G I RKP    SR+R  + K  KRKGR  G+G RKG + AR+P   +W++R+R L++ LR+ +    +D   Y  LY
Sbjct:    3 VMDLSLQRRLAASVLKCGENRVWFDPAALEDIATAATKQDIRELIEQGVIKRKPVNGVSRARINKRKLQKRKGRRRGHGSRKGAKGARMPRKRMWILRIRALRKALRQMKAEGVVDRRTYRILY 126          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_MAIZE (60S ribosomal protein L19 (Fragment) OS=Zea mays GN=RPL19 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.741e-23
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 2
Query:   41 LKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARR 226
            LKLQKRL+AS LKCG+ KVWLDPNEV+EISMANSRQNIRKLVKDGFII+KP KIHSRSR ++
Sbjct:    1 LKLQKRLAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRCKK 62          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_METJA (50S ribosomal protein L19e OS=Methanocaldococcus jannaschii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.879e-23
Identity = 48/124 (38.71%), Postives = 82/124 (66.13%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            ++ + +Q+R++A +LKCG  +VW+DP +++ + MA S+ +IR L+K+G I +K  K  S +R +++K+ ++KGR  G G R+G   AR P    WM  +R L++ L++ R+S KID  +Y  LY
Sbjct:    3 IMDVSVQRRMAAEILKCGIERVWIDPTQLDRVKMAMSKDDIRALIKEGVIKKKQKKGISSARVKKLKEQRKKGRRRGPGSRRGAAGARTPPKERWMATIRALRKTLKQLRDSGKIDRKVYRKLY 126          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_METVA (50S ribosomal protein L19e OS=Methanococcus vannielii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.193e-21
Identity = 47/123 (38.21%), Postives = 78/123 (63.41%), Query Frame = 2
Query:   35 VSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            + +  Q+R++A+VL CG  +VW+DP  + ++ MA ++ +IR L+ DG I++K  K  S +R + +++ KRKG+  G G R+G + AR P    WM  +R L+ LL++ RE+ KI+   Y  LY
Sbjct:    1 MDVSTQRRIAAAVLDCGIDRVWVDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSRRGAKGARTPKKEKWMNTIRPLRTLLKELRENEKIERSSYRKLY 123          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_METTH (50S ribosomal protein L19e OS=Methanobacterium thermoautotrophicum GN=rpl19e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 47/123 (38.21%), Postives = 77/123 (62.60%), Query Frame = 2
Query:   35 VSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            ++L  QKRL+A +LK G  ++W+DP  ++E+S A +R  +++L+KDG I  KP K  S  R++++   K+KGR  G G  KG + AR P    WM  +R L++ L++ R++ +I+   Y  LY
Sbjct:    1 MNLTTQKRLAADILKVGVNRIWIDPERIDEVSRAITRDGVKQLIKDGAIKAKPKKGISSYRSKKIAQQKKKGRRRGPGSIKGAKGARRPKKDEWMTTIRALRKDLKEMRDNREINKSTYRKLY 123          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_HALMA (50S ribosomal protein L19e OS=Haloarcula marismortui GN=rpl19e PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR RAR  +  +  G   G G RKG   AR  +   W  R+R  +  LR+ R+   +    Y DLY
Sbjct:    1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19E_HALSA (50S ribosomal protein L19e OS=Halobacterium salinarium GN=rpl19e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 45/124 (36.29%), Postives = 68/124 (54.84%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M  L  QKRL+A VL  G  +VW DP+  +EI+ A +R++IR+LV DG I  + T+ +SR RAR     +  G   G G RKG   AR      ++  +R  ++ LR+ R+   +    Y ++Y
Sbjct:    1 MSDLSAQKRLAADVLDVGENRVWFDPDAQSEIADAITREDIRELVADGTIDAEDTQGNSRGRARERDAKESYGHKKGAGSRKGKAGARQNEKREYVAGIRAQRQQLRELRDDGTLSPAQYREMY 124          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_AERPE (50S ribosomal protein L19e OS=Aeropyrum pernix GN=rpl19e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.133e-13
Identity = 44/122 (36.07%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   44 KLQKRLSASVLKCGRVKVWL--DPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKRKGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            + Q+RL+A +L  G  ++W+  DP    EI  A ++ ++R L+K G I   P K ++   ++     +RKGR  G G+RKG   ARL     WM R+R ++R LR  R+   ID   Y  LY
Sbjct:    4 RFQRRLAAEILGVGESRIWISPDPELREEIEGAVTKADVRALIKRGVIKVLPEKGNAGHASKVRHLQRRKGRRRGMGRRKGVATARLDPKERWMHRIRKIRRYLRYLRDKQVIDRKTYRRLY 125          
BLAST of FC928202 vs. ExPASy Swiss-Prot
Match: RL19_SULAC (50S ribosomal protein L19e OS=Sulfolobus acidocaldarius GN=rpl19e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.963e-12
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 2
Query:   32 MVSLKLQKRLSASVLKCGRVKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKDAKR-KGRHSGYGKRKGTREARLPT*ILWMIRMRVLKRLLRKYRESNKID*PMYHDLY 403
            M   +LQ+RL+A +   G   +  +P  + E+  A +R++I+KL+K+  +I  P +  S  R +  K  +R KG    +G RKG   AR     +W+ ++R ++R +R  R++N ID   Y  LY
Sbjct:    1 MPEFQLQRRLAADIAGVGLNNIKFNPERLEEVEEALTREDIKKLIKERAVIVNPKRGISSGRLKERKHKRRSKGEGRKHGSRKGKSGARTGDKEIWINKIRKIRRYIRWLRDNNVIDKHTYRLLY 125          
The following BLAST results are available for this feature:
BLAST of FC928202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL19_PYRFU7.069e-2541.9450S ribosomal protein L19e OS=Pyrococcus furiosus ... [more]
RL19_ARCFU1.206e-2443.5550S ribosomal protein L19e OS=Archaeoglobus fulgid... [more]
RL19_MAIZE1.741e-2383.8760S ribosomal protein L19 (Fragment) OS=Zea mays G... [more]
RL19_METJA3.879e-2338.7150S ribosomal protein L19e OS=Methanocaldococcus j... [more]
RL19_METVA6.193e-2138.2150S ribosomal protein L19e OS=Methanococcus vannie... [more]
RL19_METTH8.942e-2038.2150S ribosomal protein L19e OS=Methanobacterium the... [more]
RL19_HALMA1.023e-1537.1050S ribosomal protein L19e OS=Haloarcula marismort... [more]
RL19E_HALSA4.299e-1436.2950S ribosomal protein L19e OS=Halobacterium salina... [more]
RL19_AERPE2.133e-1336.0750S ribosomal protein L19e OS=Aeropyrum pernix GN=... [more]
RL19_SULAC8.963e-1232.0050S ribosomal protein L19e OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ06FM1 TF Citrus clementina cDNA clone KN0AAP12YJ06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928202 ID=FC928202; Name=FC928202; organism=Citrus clementina; type=EST; length=403bp
AGAGAGAGAGGGTTTTAGAAGAGAAGAGAAAATGGTGTCGTTGAAGTTAC
AGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGTCAAGGTCTGG
CTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTCCAGGCAGAA
CATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGCCAACAAAGA
TCCACTCCCGTTCTCGTGCTCGCAGAATGAAGGACGCCAAGAGGAAGGGC
CGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGCGAGGCTTCC
CACCTAAATCCTCTGGATGATAAGGATGCGTGTGCTCAAGCGGTTGCTCC
GCAAATACCGTGAGTCGAACAAAATTGACTAGCCCATGTACCATGACCTG
TAC
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