FC928204

Overview
NameFC928204
Unique NameFC928204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 7.177e-68
Identity = 121/160 (75.62%), Postives = 143/160 (89.38%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M +++R +LK+IILGDSGVGKTSLMNQYV KKF+ +YKATIGADFLTKE++ +D+  T+QIWDTAGQERFQSLG AFYRGADCC+LV+DVN+ KSFD+L+NWR+EF+IQA PSDPDNFPFVVLGNKID  G N R V+EKKA+AWCASKG+IPYFET  K
Sbjct:    1 MSTKKRRVLKIIILGDSGVGKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYRGADCCMLVFDVNNAKSFDDLDNWRDEFIIQAGPSDPDNFPFVVLGNKIDEVGVN-RQVTEKKAKAWCASKGSIPYFETSAK 159
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB7_NEUCR (Probable Ras-related protein Rab7 OS=Neurospora crassa GN=17E5.300 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.562e-67
Identity = 124/160 (77.50%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFS  YKATIGADFLT+EV  +DR  T+Q+WDTAGQERFQSLGVAFYRGADCCVLVYDVN+ KSFD L++WR+EFLIQASP DPDNFPFVVLGNKID++  + RV+S K+A  +C SKGNIPYFET  K
Sbjct:    1 MSSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDME-ESKRVISTKRAMTFCQSKGNIPYFETSAK 159
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 4.652e-67
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFET  K
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAK 157
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.652e-67
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFET  K
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAK 157
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 4.652e-67
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFET  K
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAK 157
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.652e-67
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFET  K
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAK 157
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.652e-67
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFET  K
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAK 157
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 4.652e-67
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSLGVAFYRGADCCVLV+DV +  +F  L++WR+EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AWC SK NIPYFET  K
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAK 157
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.267e-64
Identity = 121/160 (75.62%), Postives = 137/160 (85.62%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M SR++ LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQERFQSL VAFYRGADCCVLV+DV +  +F  L++WR EFLIQASP DP+NFPFVVLGNKID++   +R V+ K+A+AW  SK NIPYFET  K
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWSYSKNNIPYFETSAK 157
[Close]
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: YPT7_SCHPO (GTP-binding protein ypt7 OS=Schizosaccharomyces pombe GN=ypt7 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.951e-63
Identity = 113/160 (70.62%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            M  +++ LLKVIILG+SGVGKTS+MNQYVN+KFS  YKATIGADFLTKEV  +D++ TLQ+WDTAGQERFQSLGVAFYRGADCCVLVYDVN+ KSF+ L++WR+EFLIQASPS+P+ FPF++LGNK+DV+    R+VS+ KA A+C ++G IPYFET  K
Sbjct:    1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVE-EQKRMVSKSKALAFCQARGEIPYFETSAK 159
The following BLAST results are available for this feature:
BLAST of FC928204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTV5_VOLCA7.177e-6875.63GTP-binding protein yptV5 OS=Volvox carteri GN=YPT... [more]
RAB7_NEUCR3.562e-6777.50Probable Ras-related protein Rab7 OS=Neurospora cr... [more]
RAB7A_RAT4.652e-6776.88Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_PONAB4.652e-6776.88Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE4.652e-6776.88Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN4.652e-6776.88Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA4.652e-6776.88Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RAB7A_BOVIN4.652e-6776.88Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ... [more]
RAB7A_RABIT1.267e-6475.63Ras-related protein Rab-7a OS=Oryctolagus cuniculu... [more]
YPT7_SCHPO6.951e-6370.63GTP-binding protein ypt7 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 TF Citrus clementina cDNA clone KN0AAP12YJ07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928204 ID=FC928204; Name=FC928204; organism=Citrus clementina; type=EST; length=595bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATT
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