FC928204
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24 Identity = 60/151 (39.74%), Postives = 92/151 (60.93%), Query Frame = 1 Query: 133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQER+ SL +YRGA ++VYD+ + +SF NW +E QASP N + GNK D+ N R V ++A+++ A ++ + ET K Sbjct: 22 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL--ANKRAVDFQEAQSY-ADDNSLLFMETSAK 165
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24 Identity = 57/153 (37.25%), Postives = 93/153 (60.78%), Query Frame = 1 Query: 127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + + + ++ LQIWDTAGQERF+++ ++YRGA ++VYDV SF+N+ W +E A D+ +++GNK D+ ++V AR + S G IP+ ET K Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYAC----DSVTRLLVGNKCDLI--EKKIVDTSTAREYADSVG-IPFLETSAK 153
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3) HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24 Identity = 58/153 (37.91%), Postives = 94/153 (61.44%), Query Frame = 1 Query: 127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQERF+++ ++YRGA ++VYDV SF+N+ W +E AS +N +++GNK D+ +VV A+ + S G IP+ ET K Sbjct: 11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLT--TKKVVDYTTAKEFADSLG-IPFLETSAK 156
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 8.307e-24 Identity = 57/153 (37.25%), Postives = 94/153 (61.44%), Query Frame = 1 Query: 127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 L K++++GDS VGK+ + ++ + + + Y +TIG DF + V+ E + LQIWDTAGQERF+++ ++YRGA ++VYD+ M+SF+N+ W +E A+ D+ +++GNK D+ +R V A+A+ G IP+ ET K Sbjct: 8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYAN----DSVRKLLVGNKCDL--AENRAVDTSVAQAYAQEVG-IPFLETSAK 153
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.307e-24 Identity = 60/153 (39.22%), Postives = 95/153 (62.09%), Query Frame = 1 Query: 127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V+ + + LQIWDTAGQERF ++ ++YRGA +LVYD+ + KSF+N++ W A+ ++ ++LGNK D+D + RVV + K A + I +FET K Sbjct: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNKCDMD--DKRVVPKGKGEQ-IAREHGIRFFETSAK 154
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.307e-24 Identity = 60/153 (39.22%), Postives = 95/153 (62.09%), Query Frame = 1 Query: 127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V+ + + LQIWDTAGQERF ++ ++YRGA +LVYD+ + KSF+N++ W A+ ++ ++LGNK D+D + RVV + K A + I +FET K Sbjct: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNKCDMD--DKRVVPKGKGEQ-IAREHGIRFFETSAK 154
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.307e-24 Identity = 60/153 (39.22%), Postives = 95/153 (62.09%), Query Frame = 1 Query: 127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V+ + + LQIWDTAGQERF ++ ++YRGA +LVYD+ + KSF+N++ W A+ ++ ++LGNK D+D + RVV + K A + I +FET K Sbjct: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNKCDMD--DKRVVPKGKGEQ-IAREHGIRFFETSAK 154
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 8.307e-24 Identity = 60/153 (39.22%), Postives = 95/153 (62.09%), Query Frame = 1 Query: 127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 L K++++GDSGVGKT ++ ++ + F+ + +TIG DF K V+ + + LQIWDTAGQERF ++ ++YRGA +LVYD+ + KSF+N++ W A+ ++ ++LGNK D+D + RVV + K A + I +FET K Sbjct: 9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNKCDMD--DKRVVPKGKGEQ-IAREHGIRFFETSAK 154
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23 Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 1 Query: 124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585 +++K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQ+WDTAGQERF+++ A+YRGA +LVYDV ++F N+ W + A+ D +++GNK D+D +RVV+ ++ A G +P+ E+ K Sbjct: 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHAN----DEAQLLLVGNKSDMD---TRVVTYEQGEALAKELG-LPFIESSAK 164
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23 Identity = 56/150 (37.33%), Postives = 92/150 (61.33%), Query Frame = 1 Query: 127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576 L K++++GDSGVGK+++++++ +F + K+TIG +F T+ +Q E + QIWDTAGQER++++ A+YRGA +LVYD+ ++FDN+ W E A N ++ GNK D++ + R VSE A + K + + ET Sbjct: 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLN--HLRAVSEDDGGA-LSEKEGLSFLET 154 The following BLAST results are available for this feature:
BLAST of FC928204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC928204 ID=FC928204; Name=FC928204; organism=Citrus clementina; type=EST; length=595bpback to top |