FC928204

Overview
NameFC928204
Unique NameFC928204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS1_DROER (Ras-like protein 1 OS=Drosophila erecta GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  +LV+ VNS KSF+++  +RE+        D +  P V++GNK D+   N   V+ ++AR   A +  IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI---KRVKDAEEVPMVLVGNKCDLASWN---VNNEQARE-VAKQYGIPYIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS1_DROAN (Ras-like protein 1 OS=Drosophila ananassae GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  +LV+ VNS KSF+++  +RE+        D +  P V++GNK D+   N   V+ ++AR   A +  IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI---KRVKDAEEVPMVLVGNKCDLASWN---VNNEQARE-VAKQYGIPYIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RABT1_DICDI (Ras-related protein RabT1 OS=Dictyostelium discoideum GN=rabT1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 51/143 (35.66%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK 552
            L+KVIILGD+  GK+S++ +Y   +F     ++IG DF+ K+      + + +QIWD    +RF+ L  ++Y+GA   +L+YD  + +SF+NL  W  E +I  SP+  +N   V++GNK D+  G    +   K++ +C SK
Sbjct:   30 LVKVIILGDNKTGKSSILRRYHYNEFELGV-SSIGVDFIKKDYGMVNGKYYKIQIWDVNSCDRFRLLTHSYYKGAHGFMLLYDCTNQESFNNLQFWINE-IINKSPNS-NNSTIVIIGNKCDLVNGIK--IDPIKSKQFCDSK 167          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RABH_DICDI (Ras-related protein RabH OS=Dictyostelium discoideum GN=rabH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            LK+ I+GD  VGK+SL+ ++ N  F  Q K ++G  F  K V        LQI DT+G E+F+SL  +FY   D  ++VYD++  ++F+N   W    L +A+   P +   +++ +K D++   ++VV     +++ A   N+ +FET  K
Sbjct:    8 LKLTIIGDWNVGKSSLLYRFFNDVFYEQTKLSMGEHFFYKTVLIRGESIDLQITDTSGMEKFRSLNNSFYSNLDGILIVYDISDQETFENTKLW----LNEANKLAPKDCIKIIVASKFDLE---NKVVDSNIVKSY-ADNLNLKFFETSSK 151          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS_EMENI (Ras-like protein OS=Emericella nidulans GN=AN0182 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 50/153 (32.68%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            K++++G  GVGK+ L  Q +   F ++Y  TI  D   K+   +D +  L + DTAGQE + ++   + R  +  +LVY + S +SF+ +  ++++ L      D D FP +V+GNK D+D    RVVSE++  +  A +    + ET  K R
Sbjct:   10 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTI-EDSYRKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQIL---RVKDKDYFPIIVVGNKCDLD--KERVVSEQEGES-LARQFGCKFIETSAKSR 155          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASW_DICDI (Ras-like protein rasW OS=Dictyostelium discoideum GN=rasW PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 50/159 (31.45%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  115 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            +   ++ + I+GD GVGKT++  Q+++  F   Y  TI  D   K+   +D+++ L I DTAGQ+   ++   + R  +  +LVY V S  SFD +  +RE+ +      D D+ P +++GNKID+D        E K  A C     + + E   K R
Sbjct:    5 KNNNVISLCIMGDGGVGKTAVTIQFISNHFVYYYDPTI-EDSYRKQCLVDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQIQFFREQII---RVLDSDDVPIMMIGNKIDLDDERQVTFQEGKDLARCL---GMSFMEVSAKNR 156          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS1_DROVI (Ras-like protein 1 OS=Drosophila virilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  +LV+ VNS KSF+++  +RE+        D +  P V++GNK D+   N   V  ++AR   A +  IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI---KRVKDAEEVPMVLVGNKCDLASWN---VQNEQARE-VAKQYGIPYIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 51/160 (31.87%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            +PS      K++++GD GVGK++L  Q+  K F   Y  TI   +L K  + +++   L + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D ++FP +++ NK+D+   + R V+  + +   A+K NIPY ET  K
Sbjct:    6 VPSDNLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANKVDL--MHLRKVTRDQGKE-MATKYNIPYIETSAK 158          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASK_RAT (GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    SR V  K+A+    S G IP+ ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDLP---SRTVDTKQAQELARSYG-IPFIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASK_MSVKI (GTPase KRas OS=Kirsten murine sarcoma virus GN=K-RAS PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G SGVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    SR V  K+A+    S G IP+ ET  K R
Sbjct:    2 TEYKLVVVGASGVGKSALTIQLIQNHFVDEYDPTI-QDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQL---KRVKDSEDVPMVLVGNKCDLP---SRTVDTKQAQELARSYG-IPFIETSAKTR 149          
The following BLAST results are available for this feature:
BLAST of FC928204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_DROER2.191e-1634.62Ras-like protein 1 OS=Drosophila erecta GN=Ras85D ... [more]
RAS1_DROAN2.191e-1634.62Ras-like protein 1 OS=Drosophila ananassae GN=Ras8... [more]
RABT1_DICDI2.191e-1635.66Ras-related protein RabT1 OS=Dictyostelium discoid... [more]
RABH_DICDI2.191e-1632.89Ras-related protein RabH OS=Dictyostelium discoide... [more]
RAS_EMENI2.862e-1632.68Ras-like protein OS=Emericella nidulans GN=AN0182 ... [more]
RASW_DICDI2.862e-1631.45Ras-like protein rasW OS=Dictyostelium discoideum ... [more]
RAS1_DROVI2.862e-1634.62Ras-like protein 1 OS=Drosophila virilis GN=Ras85D... [more]
RASM_RAT3.738e-1631.88Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASK_RAT3.738e-1633.33GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3[more]
RASK_MSVKI3.738e-1633.33GTPase KRas OS=Kirsten murine sarcoma virus GN=K-R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 TF Citrus clementina cDNA clone KN0AAP12YJ07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928204 ID=FC928204; Name=FC928204; organism=Citrus clementina; type=EST; length=595bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATT
back to top