FC928204

Overview
NameFC928204
Unique NameFC928204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASK_MOUSE (GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++++RE+        D ++ P V++GNK D+    SR V  K+A+    S G IP+ ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDLP---SRTVDTKQAQELARSYG-IPFIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASH_RAT (GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  ++A+    S G IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESRQAQDLARSYG-IPYIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  ++A+    S G IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESRQAQDLARSYG-IPYIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N+ KSF++++ +RE+        D D+ P V++GNK D+    +R V  ++A+    S G IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDLP---ARTVETRQAQDLARSYG-IPYIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  +LV+ VNS KSF+++  +RE+        D +  P V++GNK D+   N   V  ++AR   A +  IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI---KRVKDAEEVPMVLVGNKCDLTTWN---VKNEQARE-VAKQYGIPYIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  +LV+ VNS KSF+++  +RE+        D +  P V++GNK D+   N   V  ++AR   A +  IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI---KRVKDAEEVPMVLVGNKCDLTTWN---VKNEQARE-VAKQYGIPYIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRRH 594
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+F  L   +Y  A C ++++DV S  ++ N+ NW  + +        +N P V+ GNK+D+     +  S    R     K N+ Y++   K  +
Sbjct:   11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNY 154          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRRH 594
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+F  L   +Y  A C ++++DV S  ++ N+ NW  + +        +N P V+ GNK+D+     +  S    R     K N+ Y++   K  +
Sbjct:   11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNY 154          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RABT2_DICDI (Ras-related protein RabT2 OS=Dictyostelium discoideum GN=rabT2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 54/155 (34.84%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  103 TMPSRRRT----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASK 552
            T+P+R       L+KV++LGD   GK S++ +Y   +F     ++IG DF+ ++    + + + +QIWD    ERF+S+  A+YRGA   +L+YD  + +SF+NL  W  E +I  SP+  +N   V++GNK D+   N   +   K++ +C SK
Sbjct:   13 TIPTRNADDDYELIKVLMLGDYKTGKGSVLRRYHYNEFELGV-SSIGVDFVIRDYGIVNGKYYKIQIWDANSCERFRSITQAYYRGAHGFMLLYDCTNQESFNNLQFWINE-IINKSPNS-NNSTIVIIGNKCDL--VNDIKIDPIKSKLFCDSK 162          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 46/136 (33.82%), Postives = 81/136 (59.56%), Query Frame = 1
Query:  130 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID-VDGGNSRVVSEKKAR 534
            LKV++LG + VGKT ++ +Y + +F + +  TIG  F +K V   +    L IWDTAG ER+Q++ V++YR A+  ++ YD+ + +S++ +  W EE L Q  P         ++G K+D +  G+ + V E++ +
Sbjct:    8 LKVVLLGYASVGKTCIVTRYTSGQFGDTH-TTIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEE-LTQNEP----EIEIYIVGTKLDLIQQGDIKAVPEEEVK 137          
The following BLAST results are available for this feature:
BLAST of FC928204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_MOUSE3.738e-1633.33GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1[more]
RASH_RAT3.738e-1633.33GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=... [more]
RASH_HUMAN3.738e-1633.33GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RASH_CHICK3.738e-1633.33GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]
RAS1_DROPS3.738e-1634.62Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE3.738e-1634.62Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
RAN_SALSA3.738e-1627.92GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_DANRE3.738e-1627.92GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RABT2_DICDI3.738e-1634.84Ras-related protein RabT2 OS=Dictyostelium discoid... [more]
RAB24_DICDI3.738e-1633.82Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 TF Citrus clementina cDNA clone KN0AAP12YJ07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928204 ID=FC928204; Name=FC928204; organism=Citrus clementina; type=EST; length=595bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATT
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