FC928204

Overview
NameFC928204
Unique NameFC928204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 42/157 (26.75%), Postives = 78/157 (49.68%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCAS---KGNIPYFETLCKRRH 594
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+F  L   +Y    C ++++DV +  ++ N+ NW  +          +N P V+ GNK+D        V ++K +A   +   K N+ Y++   K  +
Sbjct:   11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVC-----ENIPIVLCGNKVD--------VKDRKVKAKTITFHRKKNLQYYDISAKSNY 154          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRRH 594
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV S  ++ N+  W  +          +N P V+ GNK+DV    +R V  K+       K N+ Y+E   K  +
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEVSAKSNY 158          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSI (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRRH 594
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV S  ++ N+  W  +          +N P V+ GNK+DV    +R V  K+       K N+ Y+E   K  +
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEVSAKSNY 158          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB20_HUMAN (Ras-related protein Rab-20 OS=Homo sapiens GN=RAB20 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKK 528
            K+++LGD  VGKTSL+ +Y+ ++F +   +T+G  F  K+     R + + IWDTAG+E+F  LG  + RGA   +L YDVN  +S   L    + FL     +  D   F ++GNK+D+    +    EK+
Sbjct:    7 KIVLLGDMNVGKTSLLQRYMERRFPDTV-STVGGAFYLKQW----RSYNISIWDTAGREQFHGLGSMYCRGAAAIILTYDVNHRQSLVEL---EDRFLGLTDTASKDCL-FAIVGNKVDLTEEGALAGQEKE 129          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 51/156 (32.69%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  + V+ +N++KSF++++++RE+        D ++ P V++GNK  +    SR V  K+A+    S G IP+ ET  K R
Sbjct:    2 TEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCALP---SRTVDTKQAQDLARSYG-IPFIETSAKTR 149          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 50/153 (32.68%), Postives = 86/153 (56.21%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+F ++   + +     VLVY + +  +F++L + RE+ L      D D+ P V++GNK D++    RVV ++  +   A++ N  + ET  K +
Sbjct:    5 KIVVLGSGGVGKSALTVQFVQCIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMVLVGNKCDLE--EERVVGKELGKN-LATQFNCAFMETSAKAK 150          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS1_DROMO (Ras-like protein 1 OS=Drosophila mojavensis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15
Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  124 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            T  K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R  +  +LV+ VNS KSF+++  +RE+        D +  P V++GNK D+   N             A +  IPY ET  K R
Sbjct:    2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQI---KRVKDAEEVPMVLVGNKCDLPSWN------------VAKQYGIPYIETSAKTR 141          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 49/153 (32.03%), Postives = 81/153 (52.94%), Query Frame = 1
Query:  133 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            K++++G  GVGK++L  Q++   F   Y  TI  D   K+   +D++  L I DTAGQE F ++   + R  +  +LV+ V    SFD +  +  + L      D + FP +++GNK D++  N R VS  +A+     K  + Y E+  K+R
Sbjct:   10 KLVVVGGGGVGKSALTIQFIQSHFVQDYDPTI-EDSYRKQCVIDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQIL---RVKDIEEFPMILVGNKSDLE--NERTVSTAEAQE-LGRKLKVSYLESSAKQR 155          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAP1_PHYPO (Ras-related protein Rap-1 OS=Physarum polycephalum GN=RAP1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  106 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            MP R     K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+F ++   + +     VLVY + +M +F++L + RE+ L      D D+ P V++GNK D+     RV+S ++        G   + E   K +
Sbjct:    1 MPLRE---FKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIIAMSTFNDLPDLREQIL---RVKDCDDVPMVLVGNKCDL--AEQRVISTEQGDELARKFGGCAFLEASAKNK 153          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 51/155 (32.90%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCKRR 591
            L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + +N PF+++GNK D++      V E K R   A + N+ Y ET  K R
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR---ADQWNVNYVETSAKTR 161          
The following BLAST results are available for this feature:
BLAST of FC928204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_CAEEL2.423e-1526.75GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RAN1_ORYSJ2.423e-1529.22GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAN1_ORYSI2.423e-1529.22GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]
RAB20_HUMAN2.423e-1535.61Ras-related protein Rab-20 OS=Homo sapiens GN=RAB2... [more]
RASK_XENLA4.132e-1532.69GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]
RAS3_DROME4.132e-1532.68Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RAS1_DROMO4.132e-1532.69Ras-like protein 1 OS=Drosophila mojavensis GN=Ras... [more]
RAS2_HYDMA5.397e-1532.03Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RAP1_PHYPO5.397e-1532.10Ras-related protein Rap-1 OS=Physarum polycephalum... [more]
RALA_SAGOE5.397e-1532.90Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 TF Citrus clementina cDNA clone KN0AAP12YJ07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928204 ID=FC928204; Name=FC928204; organism=Citrus clementina; type=EST; length=595bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATT
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