FC928204

Overview
NameFC928204
Unique NameFC928204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.513e-25
Identity = 60/150 (40.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K++++GDSGVGK+++++++    FS   K+TIG +F TK +Q E +    QIWDTAGQER++++  A+YRGA   +LVYD+   +SFDN++ W  E    A  S       +++GNK D+   + R VSE + +A  A K  + + ET
Sbjct:   12 LFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSS----IVIMMVGNKSDLI--HLRAVSEDEGKA-LAEKEGLFFLET 154          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.813e-25
Identity = 56/150 (37.33%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L K +++GDSGVGK++L+ ++   +F+ + K+TIG +F T+ +  +++    QIWDTAGQER++++  A+YRGA   ++VYD+    SFDN+  W +E    A      N   +++GNK D+   + R VS ++A+A+ A++ N+ + ET
Sbjct:   10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKTDL--LHLRAVSTEEAQAF-AAENNLSFIET 152          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.813e-25
Identity = 57/150 (38.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A     +N   +++GNK D+   + R V   +ARA+ A K N+ + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----NNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIET 153          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 57/150 (38.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K N+ + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIET 153          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 57/150 (38.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K N+ + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIET 153          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 57/150 (38.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K N+ + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIET 153          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 57/150 (38.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFET 576
            L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK D+   + R V   +ARA+ A K N+ + ET
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDL--RHLRAVPTDEARAF-AEKNNLSFIET 153          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAK 153          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAK 153          
BLAST of FC928204 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  127 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVSEKKARAWCASKGNIPYFETLCK 585
            L K++++GDSGVGKT L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAGQERF+++  A+YRGA   +LVYD+ + KSFDN+ NW       AS SD +    ++LGNK D++  + R VS+++        G I + ET  K
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKCDMN--DKRQVSKERGEKLAIDYG-IKFLETSAK 153          
The following BLAST results are available for this feature:
BLAST of FC928204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP2_ORYSJ7.513e-2540.00Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
YPT3_SCHPO9.813e-2537.33GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11B_DISOM9.813e-2538.00Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_RAT1.282e-2438.00Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE1.282e-2438.00Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN1.282e-2438.00Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN1.282e-2438.00Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RAB8B_RAT1.282e-2440.52Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB1.282e-2440.52Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE1.282e-2440.52Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ07FM1 TF Citrus clementina cDNA clone KN0AAP12YJ07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928204 ID=FC928204; Name=FC928204; organism=Citrus clementina; type=EST; length=595bp
CGCACGCAGAGCCTCTTTAACAACTACGGAGCACGTCAAAACGATCAACT
GATTTGCGTTTGGAGGTAGATCGTTCGATCGATTGACCGATTTTGCCCCA
GAACGATGCCGTCTCGTAGAAGAACTCTCCTCAAGGTCATCATCCTCGGC
GACAGCGGGGTGGGCAAGACCTCTTTGATGAATCAATATGTAAATAAGAA
GTTTAGCAATCAGTACAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGTGCAGTTTGAAGATAGGCTCTTCACCTTACAGATCTGGGATACAGCT
GGTCAGGAAAGATTCCAAAGCCTGGGTGTTGCTTTCTACCGAGGTGCAGA
TTGCTGTGTACTTGTGTATGATGTAAATTCTATGAAGTCCTTTGACAACC
TCAATAACTGGAGAGAAGAATTCCTCATTCAGGCTAGCCCTTCGGATCCA
GACAATTTCCCCTTTGTTGTTTTAGGAAACAAGATTGATGTAGATGGTGG
AAACAGTAGGGTGGTTTCGGAGAAGAAGGCTCGAGCCTGGTGTGCCTCCA
AAGGAAATATTCCTTACTTTGAGACCCTCTGCAAAAGAAGGCATT
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