FC928212

Overview
NameFC928212
Unique NameFC928212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1548 contig Ccv1_Contig1548:3..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 55/175 (31.43%), Postives = 76/175 (43.43%), Query Frame = 1
Query:   67 FREQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLA 591
            F      L G  A++TG   GIG  +    A  GA V     N    N  + E +  G Q     CD+    +   L     S+  GK++IL+NNAG   PK                N  S +HLSQL  P ++  G G I+ I+S+A        + YASSK A + L +N+A
Sbjct:    2 FNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNAGGGGPK-PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMA 174          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 55/175 (31.43%), Postives = 76/175 (43.43%), Query Frame = 1
Query:   67 FREQRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLA 591
            F      L G  A++TG   GIG  +    A  GA V     N    N  + E +  G Q     CD+    +   L     S+  GK++IL+NNAG   PK                N  S +HLSQL  P ++  G G I+ I+S+A        + YASSK A + L +N+A
Sbjct:    2 FNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNAGGGGPK-PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMA 174          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = 1
Query:   82 WSLKGMTALVTGGTKGIGYAVVEELAAFGAIV----HTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGK-LNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            +SLKG TALVTG   GIG  + + LA  GA +    HT S +ET+     Q  + +G   +    D+   ++ E +  + +  F+ + ++IL+NNAG    +            V+  N  S + L+QLA   +   G+G II I+S+       +   Y +SK A+  LTK+ A +W
Sbjct:    8 FSLKGKTALVTGPGTGIGQGIAKALAGAGADIIGTSHTSSLSETQ-----QLVEQEGRIFTSFTLDM---SKPEAIKDSAAELFENRQIDILVNNAGIIHREKAEDFPEENWQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILVPAYTASKHAVAGLTKSFANEW 177          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = 1
Query:   85 SLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            +L   T L+TGG  GIGYA V+      A V     +E +    +++  +  L    +  D+   A  +  + +    F G L++LINNAG  I              V+  N    + +S+ A   + +AG GNII   SV G++A P    Y +SKG + QLTK++A  +
Sbjct:    2 NLTDKTVLITGGASGIGYAAVQAFLGQQANVVVADIDEAQGEAMVRKENNDRLHFVQT--DITDEAACQHAVESAVHTFGG-LDVLINNAGIEIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDY 170          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: HETN_ANASP (Ketoacyl reductase hetN OS=Anabaena sp. (strain PCC 7120) GN=hetN PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 46/161 (28.57%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   85 SLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAM 567
            +L G T L+TG ++G+G  +   LA   A V   SR+++ L Q     K+ G +      D++  +Q   L+   +    G +++LINNAG  I              +  TN  +A  L++L  P +   G+G I+ I+S+AG   +   S+Y++SK  +
Sbjct:    3 TLTGKTVLLTGASRGLGVYIARALAKEQATVVCVSRSQSGLAQTCNAVKAAGGKAIAIPFDVRNTSQLSALVQQ-AQDIVGPIDVLINNAGIEINGTFANYSLAEIQSIFNTNLLAAMELTRLLLPSMMERGSGRIVNIASLAGKKGVAFNSVYSASKAGL 162          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 53/178 (29.78%), Postives = 78/178 (43.82%), Query Frame = 1
Query:   85 SLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQ------VSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            +L   T L+TGG  GIGYA V+      A V     +E +    I++  +  L            C   IR+  +K          G L++LINNAG  I              V+  N    + +S+ A   +  +G GNII   SV GV+A P    Y +SKG + QLT+++A  +
Sbjct:    2 NLTDKTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHTDITDEPACQNAIRSAVDKF---------GGLDVLINNAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDY 170          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: FABG_PSEAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=fabG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 52/171 (30.41%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   85 SLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVS--SQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLA 591
            SL+G  ALVTG ++GIG A+  EL   GA+V   + + +   +  +  K+ G++ +G V D+   +  E +  T+    Q  G+  I++NNAG                 V+ TN  S Y LS+     +  A  G II I SV G +     + YA++K  +   T+ LA
Sbjct:    2 SLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDV---SSDESVAATLEHIQQHLGQPLIVVNNAGITRDNLLVRMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALA 169          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: ACT3_STRCO (Putative ketoacyl reductase OS=Streptomyces coelicolor GN=actIII PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 46/167 (27.54%), Postives = 77/167 (46.11%), Query Frame = 1
Query:  103 ALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQ--LAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQ 597
            ALVTG T GIG  +   L   G  V  C+R E  L   ++E +  G++  G  CD++   + E L+  V  ++ G +++L+NNAG                 V+ TN    + +++  L    +   G G I+ I+S  G   +   + Y++SK  +   TK L  +
Sbjct:    9 ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLE 174          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: DR4L2_HUMAN (Dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 49/176 (27.84%), Postives = 85/176 (48.30%), Query Frame = 1
Query:   76 QRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQ 597
            +R  L    ALVT  T GIG+A+   LA   A V   SR +  ++Q +   + +GL V+G+VC +     RE+L + ++ +  G ++IL++NA    F                +  N ++   +++   P ++  G G+++ +SS+A     P  S Y  SK A+  L   LA +
Sbjct:   24 RRDPLTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERL-VAMAVKLHGGIDILVSNAAVNPFFGS-LMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIE 197          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: HDHA_CLOSO (NADP-dependent 7-alpha-hydroxysteroid dehydrogenase OS=Clostridium sordellii PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 55/174 (31.61%), Postives = 80/174 (45.98%), Query Frame = 1
Query:   88 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPK---XXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQW 600
            L+   ALVT  T+GIG A   +LA  GAIV+   R      +   ++K +GL +     D        K M+    + +GK++IL+NN GT  P+               +   N  S Y LS+L  P +     G+I+ ISSV G I       Y  SK  +N +TK +A Q+
Sbjct:    4 LENKVALVTSATRGIGLASAIKLAQNGAIVYMGVRRLEATQEICDKYKEEGLILKPVFFD-AYNIDIYKEMIDTIIKNEGKIDILVNNFGTGRPEKDLDLVNGDEDTFFELFNYNVGSVYRLSKLIIPHMIENKGGSIVNISSVGGSIPDISRIGYGVSKSGVNNITKQIAIQY 176          
The following BLAST results are available for this feature:
BLAST of FC928212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
HDHA_ECOLI7.462e-1231.437-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO577.462e-1231.437-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
KDUD_BACSU1.662e-1130.902-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
BACC_BACSU1.662e-1130.23Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
HETN_ANASP2.171e-1128.57Ketoacyl reductase hetN OS=Anabaena sp. (strain PC... [more]
BACC2_BACSU2.171e-1129.78Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
FABG_PSEAE2.836e-1130.413-oxoacyl-[acyl-carrier-protein] reductase OS=Pseu... [more]
ACT3_STRCO2.836e-1127.54Putative ketoacyl reductase OS=Streptomyces coelic... [more]
DR4L2_HUMAN3.703e-1127.84Dehydrogenase/reductase SDR family member 4-like 2... [more]
HDHA_CLOSO4.837e-1131.61NADP-dependent 7-alpha-hydroxysteroid dehydrogenas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ11FM1 TF Citrus clementina cDNA clone KN0AAP12YJ11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928212 ID=FC928212; Name=FC928212; organism=Citrus clementina; type=EST; length=602bp
ATTTTAGATAAGATAGGAATAGTTGCTTTTCCTCCTATTAATCAATAGGA
AAAAAACATGTCAGATTTTAGAGAGCAAAGATGGTCTCTGAAGGGTATGA
CCGCCCTTGTCACAGGCGGAACCAAAGGCATCGGATATGCAGTAGTAGAA
GAACTAGCAGCATTTGGAGCAATAGTTCATACATGTTCCCGTAACGAAAC
AGAGCTTAATCAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTCAAGTGA
GTGGCTCTGTATGTGACCTGAAAATTAGAGCTCAGCGAGAGAAGCTGATG
TTGACTGTCTCGTCTCAGTTTGATGGCAAGCTCAACATCCTTATTAACAA
TGCTGGAACCTTCATACCTAAGGAAACCACAGAATTTACCGAGGAGGATT
TCTCAACTGTAATGACTACCAATTTTGAGTCTGCTTATCATCTGTCTCAA
CTTGCACACCCCCTCTTAAAATCAGCAGGAAATGGAAACATCATATTTAT
ATCCTCTGTTGCAGGCGTTATTGCTATACCTATGTGTTCCATCTATGCAT
CGAGTAAAGGGGCGATGAATCAACTCACAAAGAACTTGGCATGCCAGTGG
GC
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