FC928212

Overview
NameFC928212
Unique NameFC928212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1548 contig Ccv1_Contig1548:3..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: AYR1_YEAST (NADPH-dependent 1-acyldihydroxyacetone phosphate reductase OS=Saccharomyces cerevisiae GN=AYR1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 52/169 (30.77%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  103 ALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSG-SVCDLKIRAQREKLMLTVSSQF-----DGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTN-FESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNL 588
            A+VTG + GIGY V +ELA  G +V+ C+R       R++      +Q    S+   K+   + + ++T S        DGKL++L NNAG                     N F       +L+  L+K+   G I+F  S+AGV++ P  SIY++SK A++Q  + L
Sbjct:   12 AVVTGASGGIGYEVTKELARNGYLVYACAR-------RLEPMAQLAIQFGNDSIKPYKLDISKPEEIVTFSGFLRANLPDGKLDLLYNNAGQSCTFPALDATDAAVEQCFKVNVFGHINMCRELSEFLIKA--KGTIVFTGSLAGVVSFPFGSIYSASKAAIHQYARGL 171          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: YF3H_SCHPO (Uncharacterized oxidoreductase C22A12.17c OS=Schizosaccharomyces pombe GN=SPAC22A12.17c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 49/178 (27.53%), Postives = 87/178 (48.88%), Query Frame = 1
Query:   85 SLKGMTALVTGGTKGIGYAVVEELAAFGA---IVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIA-IP--MCSIYASSKGAMNQLTKNLACQW 600
            SLKG  A+V GG +GIG+A+    A  GA   IV+  +  E    +  Q   + G++     CD+ I  + E     +   FD  ++I++ N G    K             +  N    ++++  A P+ +  G+G+++  +S++GV+  +P   C+ Y +SK  + QL K+LA +W
Sbjct:   18 SLKGKNAVVFGGARGIGHAICSVFAEAGANAFIVYNTTPGEKAAKEIAQ---ANGVKTYTCKCDVTIPKEVEHAFAEIQKVFD-TIDIVVPNNGICTGKSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCA-YNTSKAGVIQLIKSLAVEW 190          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: RHLG_PSEAE (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=rhlG PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 54/175 (30.86%), Postives = 79/175 (45.14%), Query Frame = 1
Query:   82 WSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGN----GNIIFISSVAGVIAI-PMCSIYASSKGAMNQLTKNLA 591
            +SL G  ALVTGG++GIG  + + L   GA V  C+R+            + G        DL   A   +L   +  +   +L+IL+NNAGT                VM  N  S +   Q   PLL+ + +      +I I SVAG+ A+      Y  SK A++QL++ LA
Sbjct:    5 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQAL-GELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLA 177          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 51/170 (30.00%), Postives = 84/170 (49.41%), Query Frame = 1
Query:  100 TALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSV----CDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLACQ 597
            TA++TG T GIG A+   LA  GA +        +  + + + +  GL  SG+V     D+   ++   +M  V+ +F G  +IL+NNAG    +            ++  N  S++H  + A P +K  G G II I+S  G++A P  S Y ++K  +  LTK +A +
Sbjct:    4 TAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTD-EVAGLS-SGTVLHHPADMTKPSEIADMMAMVADRFGG-ADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGIMGLTKTVALE 170          
BLAST of FC928212 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.250e-11
Identity = 45/168 (26.79%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   88 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGSVCDLKIRAQREKLMLTVSSQFDGKLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHLSQLAHPLLKSAGNGNIIFISSVAGVIAIPMCSIYASSKGAMNQLTKNLA 591
            L+G   L+TG   GIG A     A  GA V     ++  L+  ++E +    +V   V ++  R Q ++++  V  ++ G++++L+NNAG                 V+  N +  ++++Q+  P +    NG+I+ +SSV G+   P  + YA+SK  +  +TK  A
Sbjct:    3 LEGKVCLITGAASGIGKATTLLFAQEGATVIAGDISKENLDSLVKEAEGLPGKVDPYVLNVTDRDQIKEVVEKVVQKY-GRIDVLVNNAGITRDALLVRMKEEDWDAVINVNLKGVFNVTQMVVPYMIKQRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWA 169          
The following BLAST results are available for this feature:
BLAST of FC928212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
AYR1_YEAST4.837e-1130.77NADPH-dependent 1-acyldihydroxyacetone phosphate r... [more]
YF3H_SCHPO6.317e-1127.53Uncharacterized oxidoreductase C22A12.17c OS=Schiz... [more]
RHLG_PSEAE6.317e-1130.86Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]
BDHA_RHIME6.317e-1130.00D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
FABG_THEMA8.250e-1126.793-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ11FM1 TF Citrus clementina cDNA clone KN0AAP12YJ11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928212 ID=FC928212; Name=FC928212; organism=Citrus clementina; type=EST; length=602bp
ATTTTAGATAAGATAGGAATAGTTGCTTTTCCTCCTATTAATCAATAGGA
AAAAAACATGTCAGATTTTAGAGAGCAAAGATGGTCTCTGAAGGGTATGA
CCGCCCTTGTCACAGGCGGAACCAAAGGCATCGGATATGCAGTAGTAGAA
GAACTAGCAGCATTTGGAGCAATAGTTCATACATGTTCCCGTAACGAAAC
AGAGCTTAATCAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTCAAGTGA
GTGGCTCTGTATGTGACCTGAAAATTAGAGCTCAGCGAGAGAAGCTGATG
TTGACTGTCTCGTCTCAGTTTGATGGCAAGCTCAACATCCTTATTAACAA
TGCTGGAACCTTCATACCTAAGGAAACCACAGAATTTACCGAGGAGGATT
TCTCAACTGTAATGACTACCAATTTTGAGTCTGCTTATCATCTGTCTCAA
CTTGCACACCCCCTCTTAAAATCAGCAGGAAATGGAAACATCATATTTAT
ATCCTCTGTTGCAGGCGTTATTGCTATACCTATGTGTTCCATCTATGCAT
CGAGTAAAGGGGCGATGAATCAACTCACAAAGAACTTGGCATGCCAGTGG
GC
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