FC928214

Overview
NameFC928214
Unique NameFC928214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length843
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.533e-18
Identity = 60/206 (29.13%), Postives = 100/206 (48.54%), Query Frame = 2
Query:  167 SNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKES--EHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI----------AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP 745
            +N+IG    G VYK TL +G ++          +     ++ +F+ +++TLS+  H N V+L+G+C  +    +++++ Y  NG+L   +H K      LDW  RLRIA G A  L ++HQ   P I H  + SS + L++ + A L+D      I           +  +                 +VY+FGV+L E++TGR P
Sbjct:  746 ANIIGCGGFGLVYKATLPDGTKVAIKRLSGDTGQ-----MDREFQAEVETLSRAQHPNLVHLLGYCNYKN--DKLLIYSYMDNGSLDYWLHEKVDGPPSLDWKTRLRIARGAAEGLAYLHQSCEPHILHRDIKSSNILLSDTFVAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGRRP 944          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.533e-18
Identity = 69/259 (26.64%), Postives = 120/259 (46.33%), Query Frame = 2
Query:   86 SGQLQKAFVTGVPKLKR-------------------SELEAACEDFSNV--IGSSPIGTVYKGTLSNG-------VEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSD-------------LSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTG 736
            SG+L       +PKL++                    EL  A + FS    +G    G+VY+G LS+G        E+          +    + +  F  +++++S++NHKN V L+GF E+ E   R++V+EY  NG+L +H+H  + + L W  RL IA+  A  ++++H+ + PP+ H  + SS + L   + AK+SD             +S  +  A   +                 +VY+FGV+L E+++G
Sbjct:  398 SGRLDDTRTIDIPKLEKRLCTLASLGNPGQLMEFSIDELALATDGFSVRFHLGIGSFGSVYQGVLSDGRHVAIKRAELTNPTLSGTTMRHRRADKDSAFVNELESMSRLNHKNLVRLLGFYEDTEE--RILVYEYMKNGSLADHLHNPQFDPLSWQTRLMIALDAARGIQYLHEFIVPPVIHRDIKSSNILLDATWTAKVSDFGLSQMGPTEEDDVSHLSLHAAGTLGYIDPEYYKFQQLTTKSDVYSFGVVLLELLSG 654          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.309e-18
Identity = 69/242 (28.51%), Postives = 112/242 (46.28%), Query Frame = 2
Query:   95 LQKAFVTGVPKLKR---SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHI--HIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDL----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGS 766
            +Q+ +   +  LKR    E++ A  +FS  N++G    G VYKG L NG  +          KD     EVQF+ +++ +    H+N + L GFC   E   RM+V+ Y PNG++ + +  +  E   LDW  R+ IA+G A  L ++H Q NP I H  + ++ + L E + A + D           S         +                 +V+ FGVL+ E++TG    ++D G+
Sbjct:  274 VQQDYEFEIGHLKRFSFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRL-----KDPIYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPEE--RMLVYPYMPNGSVADRLRDNYGEKPSLDWNRRISIALGAARGLVYLHEQCNPKIIHRDVKAANILLDESFEAIVGDFGLAKLLDQRDSHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGVLILELITGH--KMIDQGN 506          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 62/242 (25.62%), Postives = 111/242 (45.87%), Query Frame = 2
Query:  125 KLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL-DWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDL-----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVD----NGSLEDWAADYLSG 799
            K   SE+     +F  V+G    G V  GT++   ++          + +      +F+ ++D L +V+H N V+L+G+C+E +     +++E+ PNG L +H+  K  + + +WG RLRIA   A  LE++H    PP+ H  + ++ + L E Y AKL+D            S  + +                      +VY+FG++L EM+T +   ++D       +  W    L+G
Sbjct:  569 KFTYSEVTKMTNNFGRVVGEGGFGVVCHGTVNGSEQVAVKLLSQSSTQGYK-----EFKAEVDLLLRVHHTNLVSLVGYCDEGDHLA--LIYEFVPNGDLRQHLSGKGGKPIVNWGTRLRIAAEAALGLEYLHIGCTPPMVHRDVKTTNILLDEHYKAKLADFGLSRSFPVGGESHVSTVIAGTPGYLDPEYYHTSRLSEKSDVYSFGIVLLEMITNQA--VIDRNRRKSHITQWVGSELNG 801          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 67/263 (25.48%), Postives = 122/263 (46.39%), Query Frame = 2
Query:   98 QKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH-LDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDL----SFWNE-------IAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNG----SLEDWAADYLSGVPPLQQFVDPTL 835
            + A VT   +   S++     +F  ++G    G VY G ++   ++          + +      QF+ +++ L +V+HKN V L+G+C+E +     +++EY  NG L EH+    +   L+WG RL+I +  A  LE++H    PP+ H  + ++ + L E + AKL+D     SF  E       +                      +VY+FG+LL E++T R  +++D       + +W    L+    +Q  +DP+L
Sbjct:  558 EPAIVTKNRRFSYSQVVIMTNNFQRILGKGGFGMVYHGFVNGTEQVAVKILSHSSSQGYK-----QFKAEVELLLRVHHKNLVGLVGYCDEGDNLA--LIYEYMANGDLKEHMSGTRNRFILNWGTRLKIVIESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHFEAKLADFGLSRSFLIEGETHVSTVVAGTPGYLDPEYHRTNWLTEKSDVYSFGILLLEIITNR--HVIDQSREKPHIGEWVGVMLT-KGDIQSIMDPSL 810          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 65/256 (25.39%), Postives = 114/256 (44.53%), Query Frame = 2
Query:  113 TGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH-IKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM-----------AEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR--LPYLVDNGSLEDWAADYLSGVPPLQQFVDPTL 835
            T   +   SE+EA  ++F  V+G    G VY G L+    I          + +      +F+ +++ L +V+H N V+L+G+C+EE      +++EYAPNG L +H+   +    L W  RL+I +  A  LE++H    PP+ H  + ++ + L E + AKL+D        +                               +VY+FG++L E++T R  +    +   +  W   Y+     ++  VDP L
Sbjct:  558 TQTKRFTYSEVEALTDNFERVLGEGGFGVVYHGILNGTQPIAVKLLSQSSVQGYK-----EFKAEVELLLRVHHVNLVSLVGYCDEESNLA--LLYEYAPNGDLKQHLSGERGGSPLKWSSRLKIVVETAQGLEYLHTGCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGETHVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSRPVIQQTREKPHIAAWVG-YMLTKGDIENVVDPRL 805          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 71/260 (27.31%), Postives = 115/260 (44.23%), Query Frame = 2
Query:    2 AILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNV--IGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFC-EEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM-----------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTG 736
            A LL A    + C+  + + ++   +      + A  + V      E+E A + FS    +G    GTVY+G L N   +          +        Q   +I  LS V+H N V L+G C E+ +P   ++V+EY PNGTL EH+       L W +RL +A   A  + ++H  +NPPI H  + S+ + L  D+ +K++D    + + M E                             +VY+FGV+L E++TG
Sbjct:  294 AFLLAALAFFFFCKRRRSTPLRSHLSAKRLLSEAAGNSSVAFFPYKEIEKATDGFSEKQKLGIGAYGTVYRGKLQNDEWVAIKRLRHRDSESLD-----QVMNEIKLLSSVSHPNLVRLLGCCIEQGDP---VLVYEYMPNGTLSEHLQRDRGSGLPWTLRLTVATQTAKAIAYLHSSMNPPIYHRDIKSTNILLDYDFNSKVADFGL-SRLGMTESSHISTAPQGTPGYLDPQYHQCFHLSDKSDVYSFGVVLAEIITG 544          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: SRF7_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsis thaliana GN=SRF7 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 68/249 (27.31%), Postives = 117/249 (46.99%), Query Frame = 2
Query:  137 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSD------LSFWNEIA-MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY----LVDNGSLEDWAADYLSGVPPLQQFVDPTL 835
            S+L+ A   FS  N++G    G VY+    +G  +             P +    F + +  ++ ++H+N   L G+C E      ++V+E+  NG+L + +H+  +ES+ L W  R++IA+G A  LE++H++ +P I H  + S+ + L  +    LSD      L   NE+    +                  +VY+FGV++ E++TGR P+         SL  WA   L  +  L + VDP L
Sbjct:  410 SDLQVATNSFSVDNLLGEGTFGRVYRAQFEDGKVLAVKKIDSSAL---PTDTADDFTEIVSKIAHLDHENVTKLDGYCSEHGQ--HLVVYEFHRNGSLHDFLHLAEEESKPLIWNPRVKIALGTARALEYLHEVCSPSIVHKNIKSANILLDSELNPHLSDSGLASFLPTANELLNQNDEGYSAPETSMSGQYSLKSDVYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALGKMVDPAL 653          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 74/254 (29.13%), Postives = 114/254 (44.88%), Query Frame = 2
Query:  140 ELEAACEDF--SNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHI--KESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDL-----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR------LPYLVDNGSLEDWAADYLSGVPPLQQFVDPTL 835
            EL AA  +F     +G    G VYKG L +  ++              +    +F  ++  LS ++H N VNLIG+C + +   R++V+E+ P G+L +H+H    + E LDW MR++IA G A  LE +H + NPP+ +    SS + L E +  KLSD            S  +   M                    +VY+FGV+  E++TGR      +P+   N  L  WA    +      +  DP L
Sbjct:   78 ELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNR----EFLVEVLMLSLLHHPNLVNLIGYCADGDQ--RLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSEMPHGEQN--LVAWARPLFNDRRKFIKLADPRL 323          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 66/265 (24.91%), Postives = 120/265 (45.28%), Query Frame = 2
Query:    5 ILLVATVGIYLCRCNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXX--------KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLS-----------DLSFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR 739
            I+L+A + I +C   + S +  ++   SG L     +G  +   SE+ +   +F+ VIG    G VY G+L +G EI                        +  +F+ + + L  V+H+N  + +G+C++       +++EY  NG L +++  + +E L W  RL IA+  A  LE++H    PPI H  + ++ + L ++  AK++           DLS      M                    +VY+FG++L E++TG+
Sbjct:  521 IILIAALAI-ICIMRRESKIM-YSGAYSGPL---LPSGKRRFTYSEVSSITNNFNKVIGKGGFGIVYLGSLEDGTEIAVKMINDSSFGKSKGSSSSSSSSQVSKEFQVEAELLLTVHHRNLASFVGYCDDGRSMA--LIYEYMANGNLQDYLSSENAEDLSWEKRLHIAIDSAQGLEYLHHGCRPPIVHRDVKTANILLNDNLEAKIADFGLSKVFPEDDLSHVVTAVMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGK 778          
The following BLAST results are available for this feature:
BLAST of FC928214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
PSKR1_DAUCA2.533e-1829.13Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
ACCR4_ARATH2.533e-1826.64Serine/threonine-protein kinase-like protein CCR4 ... [more]
Y5457_ARATH3.309e-1828.51Probable LRR receptor-like serine/threonine-protei... [more]
Y5596_ARATH4.321e-1825.62Probable LRR receptor-like serine/threonine-protei... [more]
Y5182_ARATH4.321e-1825.48Probable LRR receptor-like serine/threonine-protei... [more]
Y2289_ARATH4.321e-1825.39Probable LRR receptor-like serine/threonine-protei... [more]
WAKLO_ARATH4.321e-1827.31Wall-associated receptor kinase-like 14 OS=Arabido... [more]
SRF7_ARATH4.321e-1827.31Protein STRUBBELIG-RECEPTOR FAMILY 7 OS=Arabidopsi... [more]
PBS1_ARATH4.321e-1829.13Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
Y4291_ARATH5.644e-1824.91Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP4YN02FM1 TF Citrus clementina cDNA clone KN0AAP4YN02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928214 ID=FC928214; Name=FC928214; organism=Citrus clementina; type=EST; length=843bp
CGCCATACTTCTGGTTGCAACTGTGGGCATATATCTCTGCAGATGCAATA
AGGTATCTACTGTCAAACCTTGGGCCACAGGATTGAGCGGACAGCTTCAG
AAAGCATTTGTAACTGGTGTTCCAAAGCTTAAGAGATCCGAGCTTGAAGC
AGCTTGTGAAGATTTCAGTAATGTAATTGGTTCTTCACCGATTGGTACGG
TGTACAAAGGGACATTGTCTAATGGAGTTGAAATAGCTGTGGCCTCTGTC
TCAGTGGCATCTGCCAAGGATTGGCCTAAGAACTTAGAAGTGCAGTTTAG
GAAGAAGATTGACACGTTATCAAAAGTGAACCACAAAAATTTTGTCAATC
TTATTGGATTTTGTGAAGAAGAGGAGCCTTTCACAAGAATGATGGTGTTT
GAATATGCTCCTAATGGAACACTCTTTGAGCATATACACATTAAAGAATC
AGAGCACTTGGACTGGGGAATGAGGCTGCGGATTGCAATGGGTATGGCTT
ACTGCCTAGAGCATATGCATCAGCTGAACCCACCCATAGCCCACAATTAC
TTGAACTCTTCAGCTGTCCATCTGACTGAGGACTATGCAGCCAAATTATC
AGACTTAAGCTTCTGGAATGAGATAGCCATGGCTGAAATGGCAGCAACTA
GCAAAAAACTTTCAAGTGCACCCTCAGCAAGCCTTGAAAGCAACGTGTAC
AACTTTGGCGTATTATTATTTGAAATGGTAACGGGTAGGCTCCCTTATTT
GGTGGACAACGGCTCTCTAGAAGACTGGGCAGCTGATTATTTGAGTGGAG
TGCCACCCCTTCAACAATTTGTTGATCCAACTTTAACCTCTTT
back to top