FC928214

Overview
NameFC928214
Unique NameFC928214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length843
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: WAKLR_ARATH (Wall-associated receptor kinase-like 21 OS=Arabidopsis thaliana GN=WAKL21 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 79/265 (29.81%), Postives = 120/265 (45.28%), Query Frame = 2
Query:    5 ILLVATVGIYLCRCNKVSTVKPWATGLSGQL-QKAFVTGVPKLKRSELEAACEDFS--NVIGSSPIGTVYKGTLSNG--VEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFC-EEEEPFTRMMVFEYAPNGTLFEHI-HIKESEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDL-------------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTG 736
            +++V  +  Y  R NK S     A+  +  L + A  + VP     E+E A + FS  N++G+   GTVY G   N   V I           D       Q   +I  LS V+H N V L+G C  + EPF   +V+E+ PNGTL++H+ H +    L W +RL IA   A  + H+H  +NPPI H  + SS + L  ++ +K+SD              S  +                        +VY+FGV+L E+++G
Sbjct:  259 LVIVVLIATYFFR-NKQSASSERASIANRLLCELAENSSVPFYTYKEIEKATDSFSDKNMLGTGAYGTVYAGEFPNSSCVAIKRLKHKDTTSID-------QVVNEIKLLSSVSHPNLVRLLGCCFADGEPF---LVYEFMPNGTLYQHLQHERGQPPLSWQLRLAIACQTANAIAHLHSSVNPPIYHRDIKSSNILLDHEFNSKISDFGLSRLGMSTDFEASHISTAPQGTPGYLDPQYHQDFQLSDKSDVYSFGVVLVEIISG 512          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 74/266 (27.82%), Postives = 123/266 (46.24%), Query Frame = 2
Query:  119 VPKLKRSELEAACEDFSN--VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH-------LDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI-----------AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP--YLVDNG--SLEDWAADYLSGVPPLQQFVDPTLTS 841
            VP +   EL+   ++F +  +IG    G VY G L +G              D  K  + +F  ++  +S++  +N V L+G+C +     R++ +EYAPNG+L + +H ++          L W  R++IA+G A  LE++H+   P I H  + SS + L +D  AK++D    N+             +                    +VY+FGV+L E++TGR P  + +  G  SL  WA   LS    ++Q VD  L +
Sbjct:   53 VPSIAVDELKDITDNFGSKALIGEGSYGRVYHGVLKSG------RAAAIKKLDSSKQPDREFLAQVSMVSRLKDENVVELLGYCVDGG--FRVLAYEYAPNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNILLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLS-EDKVKQCVDARLNT 309          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.257e-17
Identity = 69/264 (26.14%), Postives = 120/264 (45.45%), Query Frame = 2
Query:   98 QKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDL-----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLE-----DWAADYLSGVPPLQQFVDPTL 835
            + A +T   +   SE+     +F  V+G    G VY GT++N  ++          + +      +F+ +++ L +V+HKN V L+G+C+E E     +++EY  NG L EH+  K     L+W  RL+I +  A  LE++H    PP+ H  + ++ + L E   AKL+D            +  + +                      +VY+FG++L E++T +   LV N S E     +W    L+    +Q  +DP L
Sbjct:  572 ESAIMTKNRRFTYSEVVTMTNNFERVLGKGGFGMVYHGTVNNTEQVAVKMLSHSSSQGYK-----EFKAEVELLLRVHHKNLVGLVGYCDEGENLA--LIYEYMANGDLREHMSGKRGGSILNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHLHAKLADFGLSRSFPIEGETHVSTVVAGTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQ---LVINQSREKPHIAEWVGLMLT-KGDIQNIMDPKL 824          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.257e-17
Identity = 67/248 (27.02%), Postives = 117/248 (47.18%), Query Frame = 2
Query:  143 LEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--LDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE------------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVD----NGSLEDWAADYLSGVPPLQQFVDP 829
            +E A E +  +IG    G+VY+GTL +G E+          +        +F  +++ LS + H+N V L+G+C E +   +++V+ +  NG+L + ++ + S+   LDW  RL IA+G A  L ++H      + H  + SS + L +   AK++D  F ++ A  E                              +V++FGV+L E+V+GR P  +       SL +WA  Y+     + + VDP
Sbjct:  591 IEQATEQYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQG-----TREFDNELNLLSAIQHENLVPLLGYCNEYD--QQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGF-SKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYIR-ASKVDEIVDP 829          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.642e-17
Identity = 62/245 (25.31%), Postives = 115/245 (46.94%), Query Frame = 2
Query:  137 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--LDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEI---AMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY----LVDNGSLEDWAADYLSGVPPLQQFVDPTL 835
            + L+    +FS  N+IG   IG VY+  L +G  +          +      + +F   +  + K+   + + L+G+C E     R++V+EY PNG+L + +H+    H  L W +R+ IA+G +  L+ +H++  PP+ H    SS V L    + +++D      +     ++M                 +V++ GV++ E++TGR P+       + +L  WA   L  +  L + VDP+L
Sbjct:  488 ASLQQYTNNFSEENIIGEGSIGNVYRAELRHGKFLAVKKLSNTINRT---QSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQ--RLLVYEYCPNGSLQDALHLDRKLHKKLTWNVRINIALGASKALQFLHEVCQPPVVHQNFKSSKVLLDGKLSVRVADSGLAYMLPPRPTSQMAGYAAPEVEYGSYTCQSDVFSLGVVMLELLTGRRPFDRTRPRGHQTLAQWAIPRLHDIDALTRMVDPSL 727          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.642e-17
Identity = 65/249 (26.10%), Postives = 114/249 (45.78%), Query Frame = 2
Query:  137 SELEAACEDFS--NVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH--LDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSD------LSFWNEIA-MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY----LVDNGSLEDWAADYLSGVPPLQQFVDPTL 835
            ++L+ A   FS  N++G    G VY+    +G  +             P  +   F + +  ++ ++H N   L+G+C E      ++V+E+  NG+L + +H+ E E   L W  R++IA+G A  LE++H++ +P I    + S+ + L  +    LSD      L   NE+    +                  ++Y+FGV++ E++TGR P+         SL  WA   L  +  L + VDP L
Sbjct:  407 ADLQIATGSFSVDNLLGEGTFGRVYRAEFDDGKVLAVKKIDSSAL---PHGMTDDFIEMVSKIANLDHPNVTKLVGYCAEHGQ--HLVVYEFHKNGSLHDFLHLSEEESKALVWNSRVKIALGTARALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLASFLPTANELLNQTDEGYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLVRWATPQLHDIDALAKMVDPAL 650          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.642e-17
Identity = 60/214 (28.04%), Postives = 104/214 (48.60%), Query Frame = 2
Query:  137 SELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEH-LDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDL----SFWNEIAMAE-------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR 739
            SE+    ++F  V+G    G VY GT+    ++          +        +F+ ++D L +V+H N V+L+G+C E +     +V+E+ PNG L +H+  K     ++W +RLRIA+  A  LE++H    PP+ H  + ++ + L E++ AKL+D     SF  E    E       +                 +VY+FG++L EM+T +
Sbjct:  557 SEVVQVTKNFQRVLGKGGFGMVYHGTVKGSEQVAVKVLSQSSTQG-----SKEFKAEVDLLLRVHHTNLVSLVGYCCEGDYLA--LVYEFLPNGDLKQHLSGKGGNSIINWSIRLRIALEAALGLEYLHIGCTPPMVHRDVKTANILLDENFKAKLADFGLSRSFQGEGESQESTTIAGTLGYLDPECYHSGRLGEKSDVYSFGIVLLEMITNQ 763          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.642e-17
Identity = 59/211 (27.96%), Postives = 96/211 (45.50%), Query Frame = 2
Query:  173 VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL--EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH----IKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF-------------WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP 745
            +IGS   G VYK  L NG  I            W  +L     F +++ TL  + H++ V L+G+C  +     ++++EY  NG++++ +H     K+ E L W  RL+IA+G+A  +E++H    PPI H  + SS V L  +  A L D                 N +                      +VY+ G++L E+VTG++P
Sbjct:  953 MIGSGGSGKVYKAELKNGETIAVKKIL------WKDDLMSNKSFNREVKTLGTIRHRHLVKLMGYCSSKADGLNLLIYEYMANGSVWDWLHANENTKKKEVLGWETRLKIALGLAQGVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAHLGDFGLAKILTGNYDTNTESNTMFAGSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMP 1157          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.642e-17
Identity = 59/213 (27.70%), Postives = 97/213 (45.54%), Query Frame = 2
Query:  173 VIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNL--EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIH------IKESEHLDWGMRLRIAMGMAYCLEHM-HQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSF-------------WNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLP 745
            +IGS   G VYK  L NG  +            W  +L     F +++ TL ++ H++ V L+G+C  +     ++++EY  NG++++ +H       K+ + LDW  RLRIA+G+A  +E++ H   PPI H  + SS V L  +  A L D                 N                        +VY+ G++L E+VTG++P
Sbjct:  956 MIGSGGSGKVYKAELENGETVAVKKIL------WKDDLMSNKSFSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHEDKPVLEKKKKLLDWEARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDTNTDSNTWFACSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMP 1162          
BLAST of FC928214 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.801e-17
Identity = 65/265 (24.53%), Postives = 118/265 (44.53%), Query Frame = 2
Query:    2 AILLVATVGIYLCRCNKVSTVKPWATGLSGQL------QKAFVTGVPKLKRSELEAACEDFSNVIGSSPIGTVYKGTLSNGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE-SEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDL-----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGR 739
            AI++   V I++    K STV      LS  +      + +  T   +   SE+     +F  V+G    G V  GT++   ++          + +       F+ ++D L +V+H N V+L+G+C+E +     +++E+ P G L +H+  K     ++WG RLRIA+  A  LE++H    PPI H  + ++ + L E   AKL+D            +  + +                      +VY+FG++L E++T +
Sbjct:  521 AIIVAVLVIIFVLSKKKSSTVGALQPPLSMPMVHDNSPEPSIETKKRRFTYSEVIKMTNNFQRVVGEGGFGVVCHGTINGSEQVAVKVLSQSSSQGYK-----HFKAEVDLLLRVHHTNLVSLVGYCDERDHLA--LIYEFLPKGDLRQHLSGKSGGSFINWGNRLRIALEAALGLEYLHSGCTPPIVHRDIKTTNILLDEQLKAKLADFGLSRSFPIGGETHISTVVAGTPGYLDPEYYQTTRLGEKSDVYSFGIVLLEIITNQ 778          
The following BLAST results are available for this feature:
BLAST of FC928214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
WAKLR_ARATH5.644e-1829.81Wall-associated receptor kinase-like 21 OS=Arabido... [more]
PTI1_SOLLC5.644e-1827.82Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
RLK6_ARATH1.257e-1726.14Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
NORK_MEDTR1.257e-1727.02Nodulation receptor kinase OS=Medicago truncatula ... [more]
SUB_ARATH1.642e-1725.31Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
SRF6_ARATH1.642e-1726.10Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
RLK7_ARATH1.642e-1728.04Receptor-like protein kinase At5g59670 OS=Arabidop... [more]
GSO2_ARATH1.642e-1727.96LRR receptor-like serine/threonine-protein kinase ... [more]
GSO1_ARATH1.642e-1727.70LRR receptor-like serine/threonine-protein kinase ... [more]
PAM74_ARATH2.801e-1724.53Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP4YN02FM1 TF Citrus clementina cDNA clone KN0AAP4YN02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928214 ID=FC928214; Name=FC928214; organism=Citrus clementina; type=EST; length=843bp
CGCCATACTTCTGGTTGCAACTGTGGGCATATATCTCTGCAGATGCAATA
AGGTATCTACTGTCAAACCTTGGGCCACAGGATTGAGCGGACAGCTTCAG
AAAGCATTTGTAACTGGTGTTCCAAAGCTTAAGAGATCCGAGCTTGAAGC
AGCTTGTGAAGATTTCAGTAATGTAATTGGTTCTTCACCGATTGGTACGG
TGTACAAAGGGACATTGTCTAATGGAGTTGAAATAGCTGTGGCCTCTGTC
TCAGTGGCATCTGCCAAGGATTGGCCTAAGAACTTAGAAGTGCAGTTTAG
GAAGAAGATTGACACGTTATCAAAAGTGAACCACAAAAATTTTGTCAATC
TTATTGGATTTTGTGAAGAAGAGGAGCCTTTCACAAGAATGATGGTGTTT
GAATATGCTCCTAATGGAACACTCTTTGAGCATATACACATTAAAGAATC
AGAGCACTTGGACTGGGGAATGAGGCTGCGGATTGCAATGGGTATGGCTT
ACTGCCTAGAGCATATGCATCAGCTGAACCCACCCATAGCCCACAATTAC
TTGAACTCTTCAGCTGTCCATCTGACTGAGGACTATGCAGCCAAATTATC
AGACTTAAGCTTCTGGAATGAGATAGCCATGGCTGAAATGGCAGCAACTA
GCAAAAAACTTTCAAGTGCACCCTCAGCAAGCCTTGAAAGCAACGTGTAC
AACTTTGGCGTATTATTATTTGAAATGGTAACGGGTAGGCTCCCTTATTT
GGTGGACAACGGCTCTCTAGAAGACTGGGCAGCTGATTATTTGAGTGGAG
TGCCACCCCTTCAACAATTTGTTGATCCAACTTTAACCTCTTT
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