FC928221

Overview
NameFC928221
Unique NameFC928221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928221_ssr21 microsatellite FC928221_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:13..500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_COXBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDG 487
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS G
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPG 126          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_COXBR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDG 487
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS G
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPG 126          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_COXBN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDG 487
            + +++LDG+GE     +N I  A+TPT+D   +  P    L+ A G AVGLP +  MGNSEVGH  +G GR   Q    +D A+ASG+ Y++        K       +H++GLLS G
Sbjct:   12 MVLIILDGFGESDETTHNAIKEANTPTLDKLFRHYPHT--LLEASGRAVGLP-DGQMGNSEVGHLHIGGGRKVPQDLTRIDAAIASGEFYENPALIEALEKAKALNKAVHILGLLSPG 126          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_BACLD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  131 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDG 487
            N + A+++LDG+G       N +  A  P  D +    P +   + A G AVGLP +  MGNSEVGH  +GAGRI  Q    V++A+  G+  Q+E F   +K   E GT LHL GLLSDG
Sbjct:    3 NKLAALIILDGFGLRDETVGNAVAQAKKPNFDRYWNKYPHQ--TLTASGEAVGLP-DGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFEQNETFLAAMKHVKEKGTNLHLFGLLSDG 120          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_ANAVT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 48/118 (40.68%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDG 487
            V +V+LDGWG  +  + N I  A TP M+S   + P    L+   G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I  +     G LHL+GL S+G
Sbjct:    9 VVLVILDGWGYCEETRGNAIAAAKTPVMESLWTAYPHT--LIHTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSILSNSALVKICQEVRNRNGKLHLVGLCSEG 123          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_ANASP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena sp. (strain PCC 7120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 48/118 (40.68%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDG 487
            V +V+LDGWG  +  + N I  A TP M+S   + P    L+   G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I  +     G LHL+GL S+G
Sbjct:    9 VVLVILDGWGYCEETRGNAIAAAKTPVMESLWTAYPHT--LIHTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSILSNSALVKICQEVRNRNGKLHLVGLCSEG 123          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_HALSA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halobacterium salinarium GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  143 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDG 487
            A+V+LDGWG    D+ + +  ADTPT D + +     +  +   G  VGLP +  MGNSEVGH  +GAGR+  Q    ++ A+A+G +  ++  +          GTLH++GL+SDG
Sbjct:    4 ALVILDGWGLGDHDRRDAVRAADTPTFDEYAERGA--FGTLTTSGRDVGLP-DGQMGNSEVGHLTIGAGRVVKQAYTRIEDAIAAGDLCGNDAISGALDHVADTGGTLHVMGLVSDG 117          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_HALOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDE----GFNYIKPSFETGTLHLIGLLSDG 487
            ++R   +A++++DG+G  +    N I  A TP +D F +  P+   ++ A G AVGLP E  MGNSEVGH  LGAGRI  Q    ++ A+  G + +++       ++K +     LHL+GLLSDG
Sbjct:    1 MNRPKPLALIIMDGFGLSEKSDGNAIKQAHTPNLDKFFEEYPDT--VLDASGEAVGLP-EGQMGNSEVGHLNLGAGRIVYQDYTRINKAIEEGTLPENDALKNAIQHVKDN--NSALHLMGLLSDG 121          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_FLAPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  131 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDG 487
            N  V +++LDGWG+    K + I  A+ P ++S  K+ P     +R  G  VGLP E  MGNSEVGH  LGAGRI  Q    ++LA+ +  + Q+    E F Y K +     +H +GLLSDG
Sbjct:    2 NKKVILMILDGWGKSPDPKVSAIDNANIPFINSLYKNYPSAQ--LRTDGLNVGLP-EGQMGNSEVGHMNLGAGRIVYQDLAKINLAVQNKTLSQEKALKEAFQYAKEN--NKPIHFLGLLSDG 119          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_CELJU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cellvibrio japonicus (strain Ueda107) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIK----PSFETGTLHLIGLLSDG 487
            +S    V +++LDG+G  +  KYN ++ A TP  D+  K+ P    L+   G AVGLP    MGNSEVGH  +GAGR+  Q    ++ +++ G  + +    Y+K           +H++GLLS+G
Sbjct:    1 MSAKKPVVLLILDGYGYSERTKYNAVYAAQTPVYDNLWKTCPN--TLIDTSGMAVGLPA-GQMGNSEVGHTTIGAGRVVYQSFTRINKSISDGDFFTNP--EYVKAIDSAIANDRAVHILGLLSEG 121          
The following BLAST results are available for this feature:
BLAST of FC928221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
GPMI_COXBU2.871e-1438.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBR2.871e-1438.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBN2.871e-1438.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACLD2.871e-1442.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANAVT2.871e-1440.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANASP2.871e-1440.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALSA3.750e-1437.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALOH3.750e-1438.102,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAPJ3.750e-1440.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CELJU3.750e-1434.922,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 TF Citrus clementina cDNA clone KN0AAP12YJ14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928221 ID=FC928221; Name=FC928221; organism=Citrus clementina; type=EST; length=488bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
back to top